Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F07
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    26   0.78 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   1.0  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    24   3.1  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       23   4.2  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    23   4.2  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    23   4.2  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    23   5.5  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    23   5.5  
SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   7.3  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    23   7.3  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    23   7.3  
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po...    23   7.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    22   9.6  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    22   9.6  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    22   9.6  

>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 0.78
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 33 WWNSWLSKNVDAKTKP 80
          WWNS  S+N D  ++P
Sbjct: 47 WWNSLWSRNTDVASEP 62


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 97  FIDRNSGFVLASTFLDNQLFHHSCR 23
           ++  N+G+VL   F + Q+  HS R
Sbjct: 586 YVSTNNGYVLMFNFQNGQVIEHSLR 610


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 36  WNSWLSKNVDAKTKPLFLSMKY 101
           WN   SKN+ A + P F+   +
Sbjct: 280 WNDLFSKNISACSVPAFIDQTF 301


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 60  VDAKTKPLFLSMKYLFKRREV 122
           +DA+ KP+ L +K+  KR+++
Sbjct: 181 LDARLKPMVLLVKHWAKRKQI 201


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 42  SWLSKNVDAKTKPLF 86
           +WLS++VDA   P+F
Sbjct: 291 TWLSQSVDADMNPVF 305


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 94  IDRNSGFVLASTFLDNQLFHH 32
           IDR+S   +A + ++N L HH
Sbjct: 42  IDRDSVLPVARSLVNNNLLHH 62


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 143 LFVSYSSDFPSLEEVLHR*KQRFCFGINILGQPTV 39
           +FVS S+     +E+LHR  +R+   +NI+  P++
Sbjct: 92  VFVSESNHHE--KEILHRTCKRYRIPLNIIDNPSL 124


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 127 QVTSLRLKRYFIDRNSGFVLASTFLDNQLFHHSCRIPAARGS 2
           Q +S  L +Y    ++   L+S F +NQLF H C +P++ G+
Sbjct: 51  QASSDELHKYSKSASNEAFLSS-FAENQLF-HKC-LPSSAGA 89


>SPAC6F6.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 83  VSIYEVPLQAKGSHLSS*RKETTMXTQTSRISEKIPNLQ 199
           V++ ++PL  +GS +S    E+T    +S   E+  ++Q
Sbjct: 80  VNVSQLPLNPRGSGISGRPVESTEQLNSSLTIERSQSIQ 118


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
           Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 6/11 (54%), Positives = 6/11 (54%)
 Frame = +3

Query: 24  RHEWWNSWLSK 56
           R  WWN W  K
Sbjct: 227 RKHWWNPWAEK 237


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 213 IALITWRLGIFSEILDVW 160
           + LI   +G F+E +DVW
Sbjct: 181 LCLINGFIGAFAEAMDVW 198


>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 118 SLRLKRYFIDRNSGFVLASTFLDNQLFHHS 29
           +L + + F+     FVLA+ FL   L H+S
Sbjct: 19  ALGINQPFVSAYLSFVLANGFLLKWLIHYS 48


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 72  FWHQHSWTTNCSTTRAEF 19
           FW +   T NCS    EF
Sbjct: 56  FWMKDERTNNCSLCETEF 73


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 146 FLFVSYSSDFPSL 108
           FLF  YSS +PS+
Sbjct: 450 FLFTKYSSKYPSV 462


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 169 GCLGXHGSFFSLATQVTSLRLK 104
           GC+G  GSF  L     S RL+
Sbjct: 294 GCIGGVGSFLVLTAVEVSSRLE 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 846,684
Number of Sequences: 5004
Number of extensions: 12934
Number of successful extensions: 46
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)