Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F07
(214 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 28 0.89
12_01_0028 + 242016-242467,242547-242918,243027-243182,245007-24... 26 3.6
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22... 26 3.6
08_01_0422 + 3737429-3738006,3738083-3738824 26 3.6
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 26 4.8
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 26 4.8
11_04_0203 - 14828009-14828110,14828171-14828269,14828375-148284... 25 6.3
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100... 25 6.3
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 25 6.3
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 4 IPGLQEFGTSGGTVGCPRMLMPKQNRC 84
IPG+ F S G PRM++ NRC
Sbjct: 364 IPGVDGFADSMSVRGLPRMVIDSVNRC 390
>12_01_0028 +
242016-242467,242547-242918,243027-243182,245007-245089,
245159-245222,245704-246001,246616-246726,247059-247100
Length = 525
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 36 WNSWLSKNVD-AKTKPLFLSMKYLFKRREV 122
W++WL +NVD A+T F+++ L ++
Sbjct: 301 WSTWLEQNVDPARTSVFFMTISPLHNSSKI 330
>11_01_0029 +
226459-226973,227053-227424,227533-227688,229513-229595,
229665-229728,230209-230596
Length = 525
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 36 WNSWLSKNVD-AKTKPLFLSMKYLFKRREV 122
W++WL +NVD A+T F+++ L ++
Sbjct: 322 WSTWLEQNVDPARTSVFFMTISPLHNSSKI 351
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 211 SFDHLEVRDLLXDSGCLGXHGSFFSLATQV 122
S D E++ L GC G HGS+ +A V
Sbjct: 66 SLDESELK-ALSAPGCFGAHGSYLEVAVYV 94
>07_03_1304 -
25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = -1
Query: 181 LXDSGCLGXHGSFF-SLATQVTSLRLKRYFIDRNSG-----FVLASTFLDNQLF 38
L DSG L +GS + ++ ++ L ++ ++G FVL STFLD+Q F
Sbjct: 300 LADSG-LAANGSIVCTQPRKIAAISLAHRVVEESNGCYGDNFVLNSTFLDHQDF 352
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 36 WNSWLSKNVD-AKTKPLFLSMKYLFKRREV 122
W SW++ N+D A+T F+S+ L EV
Sbjct: 376 WASWVNDNIDPARTSVFFMSISPLHISPEV 405
>11_04_0203 -
14828009-14828110,14828171-14828269,14828375-14828461,
14828733-14829111,14829214-14829377,14829544-14829636,
14829843-14829989,14830065-14830166,14830392-14830490,
14830669-14830803,14830928-14831006,14831111-14831186,
14831281-14831370,14831723-14831798,14831880-14831914,
14832303-14832377,14832468-14832840
Length = 736
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 83 VSIYEVPLQAKGSHLSS*RKETTMXTQTSRISEKIPNLQ 199
V +++P A GSH S+ T T + SE+IP ++
Sbjct: 522 VGYHKLPRAASGSHASAALVPTLSGTIATASSERIPAIR 560
>07_03_0037 +
12709014-12709104,12709407-12709612,12710033-12710097,
12710143-12710404,12711332-12711448,12711779-12712056,
12712304-12712406
Length = 373
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 136 LATQVTSLRLKRYFIDRNSGFVLASTFLDNQLF 38
+ T TSL+ K RN+G +LA +L N+ F
Sbjct: 105 ILTHSTSLQCKIQSDKRNNGGILAGPYLYNESF 137
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 1 WIPGLQEFGTSGGTVGCP 54
W LQE G +GG + CP
Sbjct: 155 WRDSLQEGGKAGGVLSCP 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,689,740
Number of Sequences: 37544
Number of extensions: 86089
Number of successful extensions: 277
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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