Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F07
(214 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024858-1|AAF60872.2| 196|Caenorhabditis elegans Hypothetical ... 28 1.0
AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal m... 27 1.8
AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal m... 27 1.8
AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal m... 27 1.8
AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical ... 26 3.2
U97196-13|AAK68666.1| 430|Caenorhabditis elegans Altered averme... 25 5.5
Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical p... 25 7.3
Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical pr... 25 7.3
U41113-1|AAC25482.1| 430|Caenorhabditis elegans inhibitory amin... 25 7.3
U00052-6|AAK21424.1| 156|Caenorhabditis elegans Hypothetical pr... 25 7.3
AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A ... 25 7.3
AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B ... 25 7.3
Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical pr... 25 9.7
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass... 25 9.7
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein. 25 9.7
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein. 25 9.7
>AC024858-1|AAF60872.2| 196|Caenorhabditis elegans Hypothetical
protein Y71H2AL.1 protein.
Length = 196
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 214 HSFDHLEVRDLLXDSGCLGXHGSFFSLAT 128
H +HL + L G L +G F SLAT
Sbjct: 11 HELEHLSIESGLSRGGILKLYGRFISLAT 39
>AF067949-8|AAX88812.1| 565|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform c protein.
Length = 565
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 128 SSDFPSLEEVLHR*KQRFCFGINILGQPTVPPLVPNSCS 12
S DF E + +QR CF IL +PTV L ++C+
Sbjct: 505 SVDFEWQETLSPGEQQRLCFARMILAEPTVAFLDESTCN 543
>AF067949-7|AAO25995.2| 626|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform b protein.
Length = 626
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 128 SSDFPSLEEVLHR*KQRFCFGINILGQPTVPPLVPNSCS 12
S DF E + +QR CF IL +PTV L ++C+
Sbjct: 533 SVDFEWQETLSPGEQQRLCFARMILAEPTVAFLDESTCN 571
>AF067949-6|AAC19238.1| 598|Caenorhabditis elegans Peroxisomal
membrane protein relatedprotein 5, isoform a protein.
Length = 598
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 128 SSDFPSLEEVLHR*KQRFCFGINILGQPTVPPLVPNSCS 12
S DF E + +QR CF IL +PTV L ++C+
Sbjct: 505 SVDFEWQETLSPGEQQRLCFARMILAEPTVAFLDESTCN 543
>AF098989-2|AAK18954.3| 346|Caenorhabditis elegans Hypothetical
protein F47G6.3 protein.
Length = 346
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 208 FDHLEVRDLLXDSGCLGXHGSFFSLATQVTSLRLKR 101
FD+L +L ++ C G FF + T L LKR
Sbjct: 271 FDYLRNETVLRENNCPGLVQGFFKPVYESTLLNLKR 306
>U97196-13|AAK68666.1| 430|Caenorhabditis elegans Altered
avermectin sensitivityprotein 14, isoform b protein.
Length = 430
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 149 TMXTQTSRISEKIPNLQVIKAM 214
TM TQ S I+ K+P + IKA+
Sbjct: 295 TMTTQASGINSKLPPVSYIKAV 316
>Z81118-10|CAB61029.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 149 TMXTQTSRISEKIPNLQVIKAM 214
TM TQ+S I+ K+P + IKA+
Sbjct: 508 TMTTQSSGINAKLPPVAYIKAI 529
>Z81118-1|CAB03329.1| 478|Caenorhabditis elegans Hypothetical
protein R11G10.1b protein.
Length = 478
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 149 TMXTQTSRISEKIPNLQVIKAM 214
TM TQ+S I+ K+P + IKA+
Sbjct: 329 TMTTQSSGINAKLPPVAYIKAI 350
>Z77668-2|CAB61021.1| 657|Caenorhabditis elegans Hypothetical
protein R11G10.1a protein.
Length = 657
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 149 TMXTQTSRISEKIPNLQVIKAM 214
TM TQ+S I+ K+P + IKA+
Sbjct: 508 TMTTQSSGINAKLPPVAYIKAI 529
>U41113-1|AAC25482.1| 430|Caenorhabditis elegans inhibitory amino
acid receptorsubunit gbr-2B protein.
Length = 430
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 149 TMXTQTSRISEKIPNLQVIKAM 214
TM TQ S I+ K+P + IKA+
Sbjct: 295 TMTTQASGINTKLPPVSYIKAV 316
>U00052-6|AAK21424.1| 156|Caenorhabditis elegans Hypothetical
protein K02F3.9 protein.
Length = 156
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 133 ATQVTSLRLKRYFIDRNSGFVLASTFLD 50
AT++ K+Y ID +S F + STF +
Sbjct: 88 ATKLFDAAAKKYNIDPSSAFKMLSTFFE 115
>AJ000538-1|CAA04171.1| 657|Caenorhabditis elegans GluClalpha2A
protein protein.
Length = 657
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 149 TMXTQTSRISEKIPNLQVIKAM 214
TM TQ+S I+ K+P + IKA+
Sbjct: 508 TMTTQSSGINAKLPPVAYIKAI 529
>AJ000537-1|CAA04170.1| 478|Caenorhabditis elegans GluClalpha2B
protein protein.
Length = 478
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 149 TMXTQTSRISEKIPNLQVIKAM 214
TM TQ+S I+ K+P + IKA+
Sbjct: 329 TMTTQSSGINAKLPPVAYIKAI 350
>Z50071-4|CAA90409.2| 1301|Caenorhabditis elegans Hypothetical
protein T07D4.3 protein.
Length = 1301
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 36 WNSWLSKNVDAKTKPL-FLSMKYLFKR 113
WN W + N+D +PL F+SM+ + +R
Sbjct: 334 WNPWRASNID--EEPLAFMSMEQISQR 358
>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily assigned
gene nameprotein 152, isoform a protein.
Length = 2560
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 139 SLATQVTSLRLKRYFIDRNSGFVLASTFLDNQLFHHSCRIPAARG 5
+LA T+ R RN G+ LAS + L+ S IP + G
Sbjct: 1573 NLAVHSTNGATTRLISLRNEGYSLASPLGTSTLYDKSSSIPDSNG 1617
>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
Length = 2502
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 139 SLATQVTSLRLKRYFIDRNSGFVLASTFLDNQLFHHSCRIPAARG 5
+LA T+ R RN G+ LAS + L+ S IP + G
Sbjct: 1515 NLAVHSTNGATTRLISLRNEGYSLASPLGTSTLYDKSSSIPDSNG 1559
>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
Length = 2684
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 139 SLATQVTSLRLKRYFIDRNSGFVLASTFLDNQLFHHSCRIPAARG 5
+LA T+ R RN G+ LAS + L+ S IP + G
Sbjct: 1697 NLAVHSTNGATTRLISLRNEGYSLASPLGTSTLYDKSSSIPDSNG 1741
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,710,217
Number of Sequences: 27780
Number of extensions: 73344
Number of successful extensions: 213
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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