Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F05
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    62   6e-11
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   2.2  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   5.1  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.7  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   8.9  
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    25   8.9  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   8.9  
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    25   8.9  

>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 61.7 bits (143), Expect = 6e-11
 Identities = 25/46 (54%), Positives = 36/46 (78%)
 Frame = +2

Query: 305 ELFLQGESVRPGILVLINDSDWELFGELDYVLQENDCIMFISTLHG 442
           +LF+   +VRPGI+VL+ND DWEL  + +Y L+E D ++F+STLHG
Sbjct: 51  DLFILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 350 LINDSDWELFGELDYVLQENDC 415
           +IN+   EL G+L+Y +  NDC
Sbjct: 4   VINNVRCELIGDLEYFITANDC 25


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 191 REVELPALKKYSPDCQNEKWTIRELLVWIKDNLLRERPELFLQGESVRPGILVL 352
           ++++ PALK Y+P      W       W+K       PE    G+  + G+ V+
Sbjct: 87  QDLDSPALKSYNPKAVESAW----YDWWVKSGFF--EPEFGPDGKPKKEGVFVI 134


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 190 LFYFIKQQFCTTPNVYYLCVSHVILF**FTLVFNYGNLF 74
           LF+  +Q+F  T  +  +     ++F   T + NYGNLF
Sbjct: 104 LFFLREQKFQATNELENMSPERKVIF---TSMINYGNLF 139


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 152 WSGAELLFDKIKKREVELPALK 217
           W G    +DK+++R VEL AL+
Sbjct: 383 WRGVLKGYDKLRERAVELDALE 404


>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 162 APLQMYIIYVSAM*YSF-NDLLWYLIMEI 79
           +PL ++++  +    S  NDL WYL++EI
Sbjct: 392 SPLALFLVNRAISSPSIGNDLYWYLVVEI 420


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 46  LWFSVRFTMQINFHN*IPK*IIKRVLHG*H 135
           +W+S  FT+QI F   I    +KRV  G H
Sbjct: 88  MWYSFAFTVQITFFTVIAL-QVKRVAPGAH 116


>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 344 RYQDEQTPPVRIIQVSLSINYL*SRQGVPLSSIFHSGNL 228
           RY++   P V++  +S  INY      VP   +F + +L
Sbjct: 50  RYKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDL 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,281
Number of Sequences: 5004
Number of extensions: 47566
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)