Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F05
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0304 - 16469075-16469192,16469874-16469956,16470079-164701... 103 6e-23
11_01_0207 - 1620192-1620280,1620408-1620451,1620703-1620791,162... 29 1.7
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194... 29 2.2
12_01_0208 - 1567000-1567064,1567192-1567235,1567488-1567576,156... 28 5.1
06_03_0902 - 25806912-25807190,25807876-25808094,25809469-258097... 28 5.1
02_01_0125 + 920128-920392,920491-921839,921921-922084,922340-92... 27 6.8
12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045 27 8.9
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 27 8.9
>07_03_0304 -
16469075-16469192,16469874-16469956,16470079-16470157,
16470269-16470291
Length = 100
Score = 103 bits (248), Expect = 6e-23
Identities = 52/97 (53%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Frame = +2
Query: 158 GAELLFDKIKK-REVELPALKKYSPDCQNEKWTIRELLVWIKDNLLRERPELFLQGESVR 334
G ELL +K K +V+L P+ + K ++ LL W+K NL++ERPE+FL+G+SVR
Sbjct: 10 GLELLLEKSTKVHKVDL------QPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVR 63
Query: 335 PGILVLINDSDWELFGELDYVLQENDCIMFISTLHGG 445
PG+LVLIND DWEL G LD L+E D ++FISTLHGG
Sbjct: 64 PGVLVLINDCDWELCGGLDAELEEKDVVVFISTLHGG 100
>11_01_0207 -
1620192-1620280,1620408-1620451,1620703-1620791,
1620870-1620914,1621441-1621548,1621638-1621723,
1622202-1622289,1622403-1622576,1623084-1623159,
1623256-1623305,1623392-1623454,1623689-1623791,
1623871-1623973,1624679-1624739,1624864-1624904,
1625076-1625154
Length = 432
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -3
Query: 275 SRQGVPLSSIFHSGNLVSTFSVPATPLHAFLFYQTTILHHSK 150
S QG+P F G S+P + L FL++ LH +K
Sbjct: 7 SSQGIPYKEFFFVGITTIASSLPISSLFPFLYFMIEDLHVAK 48
>12_02_0959 +
24818310-24818369,24818689-24819136,24819265-24819482,
24819651-24819929
Length = 334
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +2
Query: 320 GESVRPGILV----LINDSDWELFGELDYVLQENDCIMFISTLHGG*NKTIVILVYN 478
GE+ R G+ LI S WE F + + LQEND + F HG + + +L+++
Sbjct: 45 GETWRVGVAKVADELILKSGWEDFAKA-HELQENDLLFFTCNGHGNGSCSFDVLIFD 100
>12_01_0208 -
1567000-1567064,1567192-1567235,1567488-1567576,
1568219-1568326,1568416-1568501,1568969-1569056,
1569171-1569344,1569844-1569919,1570003-1570052,
1570140-1570202,1570285-1570338,1570433-1570535,
1570615-1570666,1570849-1570909,1571034-1571074,
1571245-1571323
Length = 410
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = -3
Query: 275 SRQGVPLSSIFHSGNLVSTFSVPATPLHAFLFYQTTILHHSK 150
S QG+P F G S+P + L FL+ LH +K
Sbjct: 7 SSQGIPYKEFFFVGITTIASSLPISSLFPFLYLMIEDLHVAK 48
>06_03_0902 -
25806912-25807190,25807876-25808094,25809469-25809711,
25809810-25809974,25810141-25810721,25810940-25811048,
25811158-25811250,25811474-25811535,25811895-25811967,
25812879-25813007,25814107-25814229
Length = 691
Score = 27.9 bits (59), Expect = 5.1
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +2
Query: 164 ELLFDKIKKREVELPALKKYSPDCQNEK-WTIRE---LLVWIKDNLLRERPEL 310
E L K+K EVEL A KK + ++ T RE L W KD L R+ E+
Sbjct: 385 EYLATKVKDLEVELEATKKKDKEILHQAVLTEREKITQLQWDKDELYRKYSEM 437
>02_01_0125 +
920128-920392,920491-921839,921921-922084,922340-922370,
922534-922565,922730-923060,923210-923713
Length = 891
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +3
Query: 273 GLKIIY*ERDLNYSYRGSLFVLVSWFSLMIQTGSCLVNLIMYSKRTTALCLYPRYMEDKI 452
GLKI L+ G +++ W S + S + + MY + L L P E K+
Sbjct: 233 GLKIFSLANQLSMMGNGYVWIATDWLSAYLDANSSVPDETMYGMQ-GVLTLRPHIPESKM 291
Query: 453 K 455
K
Sbjct: 292 K 292
>12_01_0638 - 5376164-5376247,5376734-5380517,5382029-5382045
Length = 1294
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +2
Query: 236 QNEKWTIRELLVWIKDNLLRERPELFLQGESVRPGILVLINDSDWELFGELDYVLQENDC 415
+NEK T+R L + D+L E + L ++VR I+ D LF ++ V++++
Sbjct: 576 ENEKDTVRHLCISGIDHLSTEEVKKILHFKNVRTVIIEGSGLIDSNLFHAVENVMEQSKS 635
Query: 416 IMFIST 433
+ + +
Sbjct: 636 LRLLQS 641
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 255 IVHFSFWQSGEYFFSAGN 202
++HF W+ G FF+AGN
Sbjct: 52 VMHFQTWRIGILFFAAGN 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,937
Number of Sequences: 37544
Number of extensions: 263281
Number of successful extensions: 505
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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