Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F05
         (517 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003581-1|AAH03581.1|  101|Homo sapiens ubiquitin related modif...   137   2e-32
AL359091-10|CAI13493.1|  101|Homo sapiens ubiquitin related modi...   137   2e-32
AL359091-9|CAI13492.1|   63|Homo sapiens ubiquitin related modif...    71   3e-12
BC046240-1|AAH46240.1|  392|Homo sapiens CARM1 protein protein.        29   9.7  

>BC003581-1|AAH03581.1|  101|Homo sapiens ubiquitin related modifier
           1 homolog (S. cerevisiae) protein.
          Length = 101

 Score =  137 bits (332), Expect = 2e-32
 Identities = 66/96 (68%), Positives = 74/96 (77%)
 Frame = +2

Query: 158 GAELLFDKIKKREVELPALKKYSPDCQNEKWTIRELLVWIKDNLLRERPELFLQGESVRP 337
           GAELLFD IKK  V LP         Q E W IR LL+WIK NLL+ERPELF+QG+SVRP
Sbjct: 14  GAELLFDGIKKHRVTLPG--------QEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRP 65

Query: 338 GILVLINDSDWELFGELDYVLQENDCIMFISTLHGG 445
           GILVLIND+DWEL GELDY LQ+ D ++FISTLHGG
Sbjct: 66  GILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101


>AL359091-10|CAI13493.1|  101|Homo sapiens ubiquitin related
           modifier 1 homolog (S. cerevisiae) protein.
          Length = 101

 Score =  137 bits (332), Expect = 2e-32
 Identities = 66/96 (68%), Positives = 74/96 (77%)
 Frame = +2

Query: 158 GAELLFDKIKKREVELPALKKYSPDCQNEKWTIRELLVWIKDNLLRERPELFLQGESVRP 337
           GAELLFD IKK  V LP         Q E W IR LL+WIK NLL+ERPELF+QG+SVRP
Sbjct: 14  GAELLFDGIKKHRVTLPG--------QEEPWDIRNLLIWIKKNLLKERPELFIQGDSVRP 65

Query: 338 GILVLINDSDWELFGELDYVLQENDCIMFISTLHGG 445
           GILVLIND+DWEL GELDY LQ+ D ++FISTLHGG
Sbjct: 66  GILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101


>AL359091-9|CAI13492.1|   63|Homo sapiens ubiquitin related modifier
           1 homolog (S. cerevisiae) protein.
          Length = 63

 Score = 70.5 bits (165), Expect = 3e-12
 Identities = 36/58 (62%), Positives = 40/58 (68%)
 Frame = +2

Query: 158 GAELLFDKIKKREVELPALKKYSPDCQNEKWTIRELLVWIKDNLLRERPELFLQGESV 331
           GAELLFD IKK  V LP         Q E W IR LL+WIK NLL+ERPELF+QG+SV
Sbjct: 14  GAELLFDGIKKHRVTLPG--------QEEPWDIRNLLIWIKKNLLKERPELFIQGDSV 63


>BC046240-1|AAH46240.1|  392|Homo sapiens CARM1 protein protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = -2

Query: 234 QSGEYFFSAGNSTSRFFILSNNN---SAPLQMYIIYVSAM*YS-FNDLLWYLIMEIYLHS 67
           Q  E    + N T R  ++       S P Q+ II    M Y  FN+ +    +E YLH+
Sbjct: 27  QHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGYMLFNERM----LESYLHA 82

Query: 66  KSYTKP 49
           K Y KP
Sbjct: 83  KKYLKP 88


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,231,671
Number of Sequences: 237096
Number of extensions: 1660079
Number of successful extensions: 10298
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10295
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)