Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F05
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical pr...    31   0.65 
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    28   3.4  
AC006761-4|AAL32243.1|  498|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    28   3.4  
AL032623-2|CAD54165.1|  312|Caenorhabditis elegans Hypothetical ...    28   4.6  
AL032623-1|CAA21508.2|  309|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine r...    27   6.0  

>Z27080-2|CAA81603.1|  266|Caenorhabditis elegans Hypothetical
           protein F55H2.5 protein.
          Length = 266

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 277 NPDKEFPYRPFFILAIW*VLFQCRQLHFTLFYFIKQQFCTTPNVYYLCVSHVILF**FTL 98
           +PDKEF Y P F++     LF    L + +F   +++F  T +V       V +      
Sbjct: 55  DPDKEFNYHPTFMIMGMVFLFGEALLVYRVFRNERKKFSKTLHVILHSCVLVFMLMALKA 114

Query: 97  VFNYGNL 77
           VF+Y NL
Sbjct: 115 VFDYHNL 121


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/46 (28%), Positives = 28/46 (60%)
 Frame = -2

Query: 204 NSTSRFFILSNNNSAPLQMYIIYVSAM*YSFNDLLWYLIMEIYLHS 67
           N  SR+   SN NS+ +  +I +V  + Y+   L +++++ IY+++
Sbjct: 231 NLKSRYNNKSNMNSSIIVSFISFVQTLIYTIYILGFFIVLNIYVNA 276


>AC006761-4|AAL32243.1|  498|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4a protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 179 YQTTILHHSKCILFMCQP-CNTLLMIYFGI*LWKFICI 69
           Y  T  HH + I+F  QP CN +L+I   + L+    I
Sbjct: 436 YLFTQKHHERLIIFQSQPECNNILLIGCSLCLFSLFLI 473


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 179 YQTTILHHSKCILFMCQP-CNTLLMIYFGI*LWKFICI 69
           Y  T  HH + I+F  QP CN +L+I   + L+    I
Sbjct: 436 YLFTQKHHERLIIFQSQPECNNILLIGCSLCLFSLFLI 473


>AL032623-2|CAD54165.1|  312|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1b protein.
          Length = 312

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 272 WIKDNLLRERPELFLQGESVRPGILVLINDSDWE 373
           W+ D+ LRE+P   +Q     P  ++L +D+ W+
Sbjct: 45  WVADSELREQPVNSMQQVEHGPKAVILADDACWQ 78


>AL032623-1|CAA21508.2|  309|Caenorhabditis elegans Hypothetical
           protein Y43F8B.1a protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 272 WIKDNLLRERPELFLQGESVRPGILVLINDSDWE 373
           W+ D+ LRE+P   +Q     P  ++L +D+ W+
Sbjct: 45  WVADSELREQPVNSMQQVEHGPKAVILADDACWQ 78


>Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical
           protein F29G6.2 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/70 (27%), Positives = 35/70 (50%)
 Frame = +2

Query: 200 ELPALKKYSPDCQNEKWTIRELLVWIKDNLLRERPELFLQGESVRPGILVLINDSDWELF 379
           +L A +K    C+  +  +R +L  IK+ LL ER E+  +   +   +  L+N     + 
Sbjct: 150 KLEAHEKLQAKCKGLESDLRSML-GIKEELLMERDEMQRKVARLSNELSYLLNGDPRRVA 208

Query: 380 GELDYVLQEN 409
            +LD ++ EN
Sbjct: 209 EDLDSLVAEN 218


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +2

Query: 182 IKKREVELPALKKYSPDCQNEKWTIRELLVWIKDNLLRERPELFLQ 319
           +K RE+ LP L +  P CQ      ++  + + DN  R   E  LQ
Sbjct: 136 LKIRELTLPTLHEMVPFCQTSVTRFQQRCMRVNDNFKRYLGEESLQ 181


>AF016443-13|AAC24275.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein190 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -3

Query: 263 VPLSSIFHS----GNLVSTFSVPATPLHAFLFY 177
           +P S  F S     N +  F+V ATP+H F FY
Sbjct: 5   IPESGYFDSPDFLANTMHVFTVIATPIHIFAFY 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,034,071
Number of Sequences: 27780
Number of extensions: 260596
Number of successful extensions: 533
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)