Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F04
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0661 - 4807712-4807759,4807857-4807995,4808107-4808351,480...    29   2.0  
05_03_0036 + 7605138-7605445,7605718-7605805,7606355-7606408,760...    27   6.0  

>06_01_0661 -
           4807712-4807759,4807857-4807995,4808107-4808351,
           4808482-4808800,4809140-4809364,4809453-4809619,
           4809702-4809818,4809903-4810076,4810173-4810268,
           4810351-4810567,4810663-4810781,4810931-4811123,
           4811207-4811358,4811448-4811568,4811980-4812074
          Length = 808

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +3

Query: 24  NAMLFMNKYLSSV*IQIEKNISILINYLFIYMKK*TIVIYNNSVE 158
           N + F+N++LSS   Q ++++  L+N+L  +  K T ++ N+ ++
Sbjct: 152 NGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNHKGTTMMLNDRIQ 196


>05_03_0036 +
           7605138-7605445,7605718-7605805,7606355-7606408,
           7606860-7606910,7607625-7607642
          Length = 172

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -2

Query: 281 STSSNDVKFYT*HASYCIGQILKHYFF-IIINNN 183
           S+  + + F T H+S C+ + L HYFF I++ +N
Sbjct: 114 SSLLDQLLFGTPHSSCCVLKRLNHYFFPILVTSN 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,511,737
Number of Sequences: 37544
Number of extensions: 126605
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)