Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F04
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U41272-5|AAA82449.1|  296|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81536-7|CAB04367.1|  338|Caenorhabditis elegans Hypothetical
           protein F40D4.9a protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/54 (20%), Positives = 30/54 (55%)
 Frame = -3

Query: 265 MSSFTHNTHHIVLVKY*NTIFLLLLIIMDQTNYMSSSTELLYITIVYFFIYINK 104
           + ++ H+ H+     Y +T   +  +I+ ++ Y+++   + Y   + F++Y+NK
Sbjct: 17  LKAWNHHNHN-ASKPYVHTESDIYTVILSKSEYVANFLIVAYFVFLPFYVYVNK 69


>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 205 FLLLLIIMDQTNYMSSSTELLYITIVYFFIYI 110
           F+ ++ ++DQ N+        Y  I YFF YI
Sbjct: 375 FIQIITLLDQENFFVLHLFCFYHNIKYFFYYI 406


>U41272-5|AAA82449.1|  296|Caenorhabditis elegans Hypothetical
           protein T03G11.6 protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +2

Query: 299 FNILTALCYSEVIFM*NLAT**LEINSHYDVSSPLRDSMNIFSAFNYNVFYQII 460
           +N+L+AL ++E     +L T    ++ HY     L D  N+    N NV   ++
Sbjct: 150 YNVLSALEWAETDVKFDLVTAFNLLDRHYSPGKLLNDLWNVARRSNCNVIVSLV 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,794,754
Number of Sequences: 27780
Number of extensions: 154980
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)