Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F03
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 103 1e-22
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 102 1e-22
07_03_0078 - 13147741-13148913 32 0.28
11_02_0103 - 8320207-8320443,8320540-8320593,8321055-8321162,832... 30 1.1
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 1.5
09_01_0024 + 438288-438542,439020-439069,440096-440351 29 2.6
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 29 2.6
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 28 3.4
04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366... 28 4.5
01_03_0287 - 14685536-14685697,14686536-14686686,14686778-146870... 28 4.5
11_02_0038 - 7631462-7634428,7635975-7636250 27 6.0
02_05_1152 + 34494423-34494586,34494725-34494781,34494851-344949... 27 6.0
07_03_0079 + 13169773-13170861 27 7.9
03_06_0682 - 35516081-35518303 27 7.9
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 103 bits (246), Expect = 1e-22
Identities = 55/106 (51%), Positives = 69/106 (65%)
Frame = +1
Query: 76 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 255
P+ + +G+ KGH TK + + RP+ KG TK FVR L+REVVG A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55
Query: 256 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 393
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 102 bits (245), Expect = 1e-22
Identities = 55/106 (51%), Positives = 69/106 (65%)
Frame = +1
Query: 76 PRFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQ 255
P+ + +G+ KGH TK + + RP+ KG TK FVR+L+REV G A
Sbjct: 6 PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55
Query: 256 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLTQMR 393
YEKR ELLKV KDKRALK KR+LGTH RAK+KREE++ VL +MR
Sbjct: 56 YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101
>07_03_0078 - 13147741-13148913
Length = 390
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 179 AGLILMALSVIPFLPADIFVVLWPF 105
AGL+ AL VIP LP + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>11_02_0103 -
8320207-8320443,8320540-8320593,8321055-8321162,
8321406-8321551,8321697-8321892,8323312-8323533
Length = 320
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 14 SRTMDPRAAEFGTRVNPKSWLPDLKSQLVCEKATKRQRYPLAKRVLQTK 160
SR ++PR GT ++ + DL +L C K TK P+ K +L K
Sbjct: 145 SRQVEPRGKTMGTAIDSEPTAIDLFKELHCSK-TKCFSEPVKKAILAAK 192
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 29.5 bits (63), Expect = 1.5
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +3
Query: 387 DEEGGRTPSPPRHHSH 434
DEE TPSPP HH H
Sbjct: 83 DEEEEATPSPPPHHQH 98
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 250 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 375
A++E R E LK ++++ A K LKR+ + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163
>04_04_1144 +
31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/71 (22%), Positives = 38/71 (53%)
Frame = +1
Query: 157 KAIKIRPARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 336
+A + + A L+ + S+ ++LV E +G EK+ +ELL + +++ ++LK +
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697
Query: 337 HIRAKRKREEL 369
R + + ++
Sbjct: 698 EERLQSQESKV 708
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -2
Query: 293 FDTLSNSIALFSYCACPTTSRTKSRTNLECLV*MPFSLAGLILMALSVIPFLPADIFVVL 114
F +N++ +S C CP +R CL F+LA ++ +SV FLP ++ L
Sbjct: 326 FGECTNTLGSYS-CMCPRGARGDPSIPQGCLEKDKFTLALKVVTGVSVGVFLPLLMYFCL 384
Query: 113 W 111
+
Sbjct: 385 Y 385
>04_04_1193 + 31634043-31634349,31634685-31634847,31635048-31636622,
31636653-31637541,31639401-31641266
Length = 1599
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 351 LRADVCAE-ATLQELKGALIFRYFEQFHCPLLILCV 247
L+ + CA ATL L+ R+ E F CP L LC+
Sbjct: 1418 LKIEGCASLATLVGLQSLHSLRHLEVFRCPSLPLCL 1453
>01_03_0287 -
14685536-14685697,14686536-14686686,14686778-14687016,
14687895-14687974,14688358-14688493
Length = 255
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 14 SRTMDPRAAEFGTRVNPKSWLPDLKSQLVCEKATKRQRYPLAKRVL 151
SR ++PR GT ++ + DL ++L C K TK P+ K ++
Sbjct: 159 SRQVEPRGKSMGTAIDGEPTAIDLFNELHCSK-TKGFSEPVKKAIV 203
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 295 DKRALKFLKRRLGTHIRAKRKREELSNV 378
DK+ LKFL R TH + E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818
>02_05_1152 +
34494423-34494586,34494725-34494781,34494851-34494908,
34494989-34495088,34495270-34495383,34495588-34495810,
34496112-34496246,34496575-34496679,34496906-34497001,
34497387-34497516,34497933-34497983,34498538-34498648,
34499267-34499376,34499490-34499655,34499740-34499820,
34499907-34499975,34500099-34500212,34500699-34500760,
34500894-34500990,34501152-34501271
Length = 720
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 382 LVRC*ALHASSSR--GCVCRGDAS 317
L RC LH+ SS GC+C GD++
Sbjct: 527 LKRCVGLHSGSSVVVGCICNGDSN 550
>07_03_0079 + 13169773-13170861
Length = 362
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 179 AGLILMALSVIPFLPADIFVVLWP 108
AGL+ AL IP LP+ + +V WP
Sbjct: 44 AGLLYFALVGIPALPSILRLVAWP 67
>03_06_0682 - 35516081-35518303
Length = 740
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 175 PARLKGIQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 342
P + ++ + F+++++ +++ EKR ELL+ ++K LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383
Query: 343 RAKRKREELSNVL 381
R K ++E +L
Sbjct: 384 RTKTTKKEWEAIL 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,184,055
Number of Sequences: 37544
Number of extensions: 270332
Number of successful extensions: 821
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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