Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_F02
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 86 7e-19
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 73 7e-15
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 36 0.001
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 27 0.63
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 1.9
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 25 2.5
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re... 24 3.4
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 24 3.4
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 24 3.4
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb... 24 4.4
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 24 4.4
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 23 5.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 23 5.9
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch... 23 5.9
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 23 5.9
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 23 5.9
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 23 7.8
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c... 23 7.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 23 7.8
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 86.2 bits (204), Expect = 7e-19
Identities = 37/55 (67%), Positives = 47/55 (85%)
Frame = +1
Query: 106 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVIRPEQIMKSIIPVVMA 270
P+Y PFFGVMG +AI+F+S GAAYGTAK+G GI+AM V+RP+ I+K+ IPVVMA
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMA 61
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 72.9 bits (171), Expect = 7e-15
Identities = 32/55 (58%), Positives = 41/55 (74%)
Frame = +1
Query: 106 PIYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVIRPEQIMKSIIPVVMA 270
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE +MKS+IPVVM+
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMS 61
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 35.5 bits (78), Expect = 0.001
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +1
Query: 124 FGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAVIRPEQIMKSIIPVV 264
+G++G AS + F +GAA+G GT I AV P K++I ++
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISII 91
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 0.63
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 109 LDFRPFFLNVGVFTGP*NSDDYLHTL 32
+DF P V TGP N+DDY+H +
Sbjct: 357 MDF-PNITQVVQITGPSNTDDYIHRI 381
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 1.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 110 IGFSAIFLECGSIYRSLKL**LSAHTHSTKL 18
+ F+AI + CG + R+L L+AH + +L
Sbjct: 388 VTFAAILVNCGVLSRNLSFISLAAHDTNAQL 418
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 24.6 bits (51), Expect = 2.5
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = -1
Query: 251 MDFMICSGRITAMAAIPVPDLAVPYAAPREL 159
++ ++ +G ++ +P+ DLA Y A R++
Sbjct: 283 LEAIVATGAKVVLSKLPIGDLATQYFADRDI 313
>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
related|Schizosaccharomyces pombe|chr 2|||Manual
Length = 773
Score = 24.2 bits (50), Expect = 3.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +3
Query: 87 KKNGRKSNLWTFLWSYGGGVCHHLQLPWRCIWHSQV 194
K K + W W + G+ ++ P +C WHS+V
Sbjct: 398 KATANKKHFWE--W-FQRGIDPDIEDPSKCHWHSEV 430
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.2 bits (50), Expect = 3.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -2
Query: 232 QAESPPWRQYRCLTWL 185
Q +PPW C +WL
Sbjct: 448 QGSAPPWHYIPCQSWL 463
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 24.2 bits (50), Expect = 3.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 74 YSHIQEKWPKIQSMDLSLELWG 139
+ ++QE W K++ +DL+ L G
Sbjct: 260 HEYVQEAWYKLEPLDLTKSLEG 281
>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 287
Score = 23.8 bits (49), Expect = 4.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 80 HIQEKWPKIQSMDLSLELWGRRLPSSSAPLALHMAQPSQAPVLPP 214
HI WP+ QS D E G L + A + + ++ +L P
Sbjct: 62 HIATLWPETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTP 106
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 23.8 bits (49), Expect = 4.4
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 94 MAENPIYGPFFGVMGAASAIIFSSLGAAYGTAKSG 198
++E P+ GP V+ AASA +L AA T K G
Sbjct: 132 VSEEPVTGPAADVIAAASA----ALKAAQRTIKPG 162
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 80 HIQEKWPKIQSMDLSLELWGRRLPS 154
H KW S D ++++W R PS
Sbjct: 92 HCDGKWLATSSEDGTVKVWDMRAPS 116
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 23.4 bits (48), Expect = 5.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 188 AVPYAAPRELKMMADAAPITPKKGP 114
++P +AP L M A AAP P P
Sbjct: 430 SLPPSAPPSLPMGAPAAPPLPPSAP 454
>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = +3
Query: 144 VCHHLQLPWRCIWHSQVRH 200
V HL L W C+W +Q H
Sbjct: 71 VAPHL-LKWTCVWPNQSSH 88
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +1
Query: 109 IYGPFFGVMGAASAIIFSSLGAAYGTAKSGTGIAAMAV 222
+YGPF+ A+ FS+ Y +G G + ++
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI 124
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = +2
Query: 44 IVIRVLGTC--KYSHIQEKWPK 103
++I V+G + SH+QEKW K
Sbjct: 103 VLITVMGFAMLRVSHLQEKWRK 124
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 144 VCHHLQLPWRCIWHS-QVRH 200
VC+ ++P CIW QV H
Sbjct: 167 VCYDQRIPNSCIWRDIQVHH 186
>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 23.0 bits (47), Expect = 7.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 69 VNTPTFKKNGRKSNLWTFLWSYGGGVCHHLQLPWR 173
VN P F K+ + S + + G + + LPWR
Sbjct: 29 VNAPVFGKDAKLSPHLAIVLADKGFMLEQVCLPWR 63
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 158 SAPLALHMAQPSQAPVLPP 214
SAP+A ++++PS P PP
Sbjct: 1081 SAPVANNVSKPSAVPPPPP 1099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,338,279
Number of Sequences: 5004
Number of extensions: 27816
Number of successful extensions: 72
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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