Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_F01
         (509 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004506-1|AAO42670.1| 1545|Drosophila melanogaster AT10293p pro...    54   1e-07
AY094719-1|AAM11072.1|  237|Drosophila melanogaster GH18470p pro...    50   2e-06
AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-P...    50   2e-06
AF495912-1|AAN60444.1| 2576|Drosophila melanogaster nesprin prot...    49   4e-06

>BT004506-1|AAO42670.1| 1545|Drosophila melanogaster AT10293p protein.
          Length = 1545

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 2/156 (1%)
 Frame = +3

Query: 24   LQRDFRRFSELRDELQRAEPRVXXXXXXXXXXXXP--DAPPHSDDITRRLGELRLRLQSL 197
            L+  F++F +LR EL+R EPRV                +   S     RL +LRLRLQSL
Sbjct: 1351 LETKFKKFKDLRAELERCEPRVVSLQDAADQLLRSVEGSEQQSQHTYERLTDLRLRLQSL 1410

Query: 198  RKLCGVYAPPSLGLPCASAAVQPXSRXXXXXXXXXXXXXPQLMEDDEEQISTMSLPPLXX 377
            R+L G+Y    LG   A    +  +                 +     Q +  +      
Sbjct: 1411 RRLSGIYI-VKLG---AVLGYEGDNLGVPLHMLSSELLDNTTLSTSSMQAAAPNTENANN 1466

Query: 378  XXXXXXXXXXXQNLSRVQRGLRFVSRVARASLPFQA 485
                        N + + RG RF+ RVARASLP QA
Sbjct: 1467 TDGGDAVDGDVINTTVLARGARFLGRVARASLPIQA 1502


>AY094719-1|AAM11072.1|  237|Drosophila melanogaster GH18470p
           protein.
          Length = 237

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 47/160 (29%), Positives = 65/160 (40%), Gaps = 6/160 (3%)
 Frame = +3

Query: 24  LQRDFRRFSELRDELQRAEPRVXXXXXXXXXXXXP-----DAPPHSDDIT-RRLGELRLR 185
           L+  F++F +LR EL+R EPRV                      H+ + T  RL +LRLR
Sbjct: 39  LETKFKKFKDLRAELERCEPRVVSLQDAADQLLRSVEGSEQQSQHTYERTLSRLTDLRLR 98

Query: 186 LQSLRKLCGVYAPPSLGLPCASAAVQPXSRXXXXXXXXXXXXXPQLMEDDEEQISTMSLP 365
           LQSLR+L G+Y    LG   A    +  +                 +     Q +  +  
Sbjct: 99  LQSLRRLSGIYI-VKLG---AVLGYEGDNLGVPLHMLSSELLDNTTLSTSSMQAAAPNTE 154

Query: 366 PLXXXXXXXXXXXXXQNLSRVQRGLRFVSRVARASLPFQA 485
                           N + + RG RF+ RVARASLP QA
Sbjct: 155 NANNTDGGDAVDGDVINTTVLARGARFLGRVARASLPIQA 194


>AE014134-885|AAZ66446.1| 11707|Drosophila melanogaster CG33715-PD,
             isoform D protein.
          Length = 11707

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 47/160 (29%), Positives = 65/160 (40%), Gaps = 6/160 (3%)
 Frame = +3

Query: 24    LQRDFRRFSELRDELQRAEPRVXXXXXXXXXXXXP-----DAPPHSDDIT-RRLGELRLR 185
             L+  F++F +LR EL+R EPRV                      H+ + T  RL +LRLR
Sbjct: 11509 LETKFKKFKDLRAELERCEPRVVSLQDAADQLLRSVEGSEQQSQHTYERTLSRLTDLRLR 11568

Query: 186   LQSLRKLCGVYAPPSLGLPCASAAVQPXSRXXXXXXXXXXXXXPQLMEDDEEQISTMSLP 365
             LQSLR+L G+Y    LG   A    +  +                 +     Q +  +  
Sbjct: 11569 LQSLRRLSGIYI-VKLG---AVLGYEGDNLGVPLHMLSSELLDNTTLSTSSMQAAAPNTE 11624

Query: 366   PLXXXXXXXXXXXXXQNLSRVQRGLRFVSRVARASLPFQA 485
                             N + + RG RF+ RVARASLP QA
Sbjct: 11625 NANNTDGGDAVDGDVINTTVLARGARFLGRVARASLPIQA 11664


>AF495912-1|AAN60444.1| 2576|Drosophila melanogaster nesprin protein.
          Length = 2576

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 6/160 (3%)
 Frame = +3

Query: 24   LQRDFRRFSELRDELQRAEPRVXXXXXXXXXXXXP-----DAPPHSDDIT-RRLGELRLR 185
            L+  F++F +LR EL+R +PRV                      H+ + T  RL +LRLR
Sbjct: 2378 LETKFKKFKDLRAELERCQPRVVSLQDAADQLLRSVEGSEQQSQHTYERTLSRLTDLRLR 2437

Query: 186  LQSLRKLCGVYAPPSLGLPCASAAVQPXSRXXXXXXXXXXXXXPQLMEDDEEQISTMSLP 365
            LQSLR+L G+Y    LG   A    +  +                 +     Q +  +  
Sbjct: 2438 LQSLRRLSGIYI-VKLG---AVLGYEGDNLGVPLHMLSSELLDNTTLSTSSMQAAAPNTE 2493

Query: 366  PLXXXXXXXXXXXXXQNLSRVQRGLRFVSRVARASLPFQA 485
                            N + + RG RF+ RVARASLP QA
Sbjct: 2494 NANNTDGGDAVDGDVINTTVLARGARFLGRVARASLPIQA 2533


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,933
Number of Sequences: 53049
Number of extensions: 122235
Number of successful extensions: 247
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1846255872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)