Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E24
         (468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    86   3e-18
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    83   2e-17
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    77   1e-15
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    27   1.9  
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    26   3.3  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   7.6  

>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 85.8 bits (203), Expect = 3e-18
 Identities = 42/109 (38%), Positives = 58/109 (53%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 257
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61

Query: 258 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDIGFGLFD 404
           IGS                                    D+D+GFGLFD
Sbjct: 62  IGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 43/109 (39%), Positives = 59/109 (54%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 257
           S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLN 61

Query: 258 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDIGFGLFD 404
           IGSG                                   D+D+GFGLFD
Sbjct: 62  IGSG-AGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEESDEDMGFGLFD 109


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 77.4 bits (182), Expect = 1e-15
 Identities = 39/109 (35%), Positives = 57/109 (52%)
 Frame = +3

Query: 78  SKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITN 257
           S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALEG ++++L+ N
Sbjct: 2   SASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLN 61

Query: 258 IGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDIGFGLFD 404
           IGS                                    D+D+GFGLFD
Sbjct: 62  IGS-AGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEESDEDMGFGLFD 109


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 203 RPVRLNIYSSRFQYG*DFLTGNGDIVIYQDKGGVNTS 93
           +PV L   +++F +G   +T N D  I+  K G+N S
Sbjct: 66  KPVSLPASTTQFTFGKPAVTANNDSDIHLKKRGLNKS 102


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 105 SALILVD-DDV--AVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 254
           S L+L +  DV  A++ E+IS IL  +      +W      AL G+N++D I+
Sbjct: 119 SILVLANKSDVSGALSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
 Frame = +3

Query: 111 LILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT----NIGSGVXX 278
           L+ V    + +   I ++L    ++ E          L G N+ +LI      + +    
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 279 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDIGFGLFD 404
                                           D+D+GFGLFD
Sbjct: 69  GAVATPAAGGAAGAEATSAAEEAKEEEAAEESDEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,435,309
Number of Sequences: 5004
Number of extensions: 21601
Number of successful extensions: 65
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)