Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E24
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...   119   9e-28
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...   116   1e-26
U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    28   2.9  
Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical pr...    28   3.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score =  119 bits (287), Expect = 9e-28
 Identities = 57/111 (51%), Positives = 70/111 (63%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EPYWPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60

Query: 252 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDIGFGLFD 404
           T++ SG                                   DDD+GFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score =  116 bits (278), Expect = 1e-26
 Identities = 56/111 (50%), Positives = 69/111 (62%)
 Frame = +3

Query: 72  MASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 251
           MAS  ELACVY+ALIL DD+VA+TGEKI+T+LKAA V+ EP WPGLFAKALEG++V++LI
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVDVKNLI 60

Query: 252 TNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDIGFGLFD 404
           T++ SG                                   DDD+GFGLFD
Sbjct: 61  TSVSSGAGSGPAPAAAAAAPAAGGAAPAAETKKKEEPKEESDDDMGFGLFD 111


>U80836-5|AAB37892.2|  621|Caenorhabditis elegans Hypothetical
           protein B0432.7 protein.
          Length = 621

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 96  CVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS 266
           C ++ L + DDD  +T +  + +L+   V      PG+   A  G NV +    IGS
Sbjct: 269 CTFNVLTIGDDDCMMTRQIAADLLRRLVVSESSTTPGVPTLASTGKNVLNYGFFIGS 325


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 4/90 (4%)
 Frame = +3

Query: 147 EKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVXXXXXXXXXXXXXXXXXX 326
           + +  IL A  VD +     L    L G  V +LI    +G+                  
Sbjct: 21  DDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSVSGGAAPAAAAAPAAG 80

Query: 327 XXXXXXXXXXXXXXX----XDDDIGFGLFD 404
                               DDD+GFGLFD
Sbjct: 81  GAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 196 YGSTSTAAAFSMVEIFSPVTATSSSTRIRAE*TQANSAF 80
           +GST+T  AFS   +F   T+T++S+      T   S F
Sbjct: 471 FGSTATKPAFSGGSLFGATTSTATSSAAATTTTPTTSLF 509


>Z81030-5|CAB02709.1|  324|Caenorhabditis elegans Hypothetical
           protein C01G10.7 protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 69  KMASKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPY 197
           KM  K  +    S ++ ++D VA+T +  + +  AAA+D  PY
Sbjct: 37  KMLDKVPMMQADSVVLELEDGVALTAKADARVRAAAALDKLPY 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,979,035
Number of Sequences: 27780
Number of extensions: 123144
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)