Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E19
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.2  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    26   2.8  
SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    26   2.8  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    26   2.8  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    26   3.7  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    25   6.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   6.5  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    25   8.6  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 477 VLIYQFLLMGFHSIIMYNQFLLFNIITIVMILFSFPYVHFIW 352
           +L++ F L+ F S      FL F     ++   SFP +HF++
Sbjct: 116 LLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLF 157


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 405 IITIVMILFSFPYVHFIW 352
           +I IV ILFS P++ + W
Sbjct: 216 VIIIVQILFSIPFLAYFW 233


>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 441 SIIMYNQFLLFNIITIVMILFSFPYVHFI 355
           S + YN  +LF I  +  ++ SFP++ F+
Sbjct: 104 SQVFYNLHMLFGIDFVSTLVVSFPHITFL 132


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 474 LIYQFLLMGFHSIIMYNQFLLFNIITIVMILFSFPYVHFIWVHK 343
           L++  L M +   ++ + FL F+ IT +  +F F    FI++ K
Sbjct: 63  LVFLILGMIYTISLLQSNFLFFSGITPIRAIFDFILTGFIYLKK 106


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 253 CLDKLTVAYNFKANCLQTDRKLWTYFSKLDFVNPNKVYIWETEEN 387
           C+ K+++     + CL  D K       L  + P+  ++W+ EEN
Sbjct: 376 CIKKISLQSKVTSICLSKDSKY-----ALTNLEPHTTFLWDLEEN 415


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 338 SFEKYVHSFLSVCKQFALK-LYATVSLSKHI 249
           S E+Y+H+ LS+C + A + + + +S + HI
Sbjct: 154 SIEQYLHAVLSLCSELARQSVNSVISGNYHI 184


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
 Frame = +1

Query: 175 ICERLHFCTGLKIIMQDPLPSNICNI--CLDKLT-----VAYNFKANCLQTDRKLWTYFS 333
           +CE      GL I  Q P P+N C +   LD +      V Y   A+    D K  T  S
Sbjct: 271 LCESNTLLNGLTIRPQKPTPTN-CGLQHALDNINANTDFVQYVLHASIKHEDNKNPTDAS 329

Query: 334 KLDFVNPNKVY 366
           K   + P   Y
Sbjct: 330 KTKIIQPPSSY 340


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +1

Query: 82  VQEKIESSDVCRTCMCRGSDMNSLFDSGIINICERLHFCTG 204
           +QE++  +D  R    R   +++  DSG     ER+ + TG
Sbjct: 44  IQEQLNDNDKKRLKQIRNIGISAHIDSGKTTFTERVLYYTG 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,113,302
Number of Sequences: 5004
Number of extensions: 44334
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)