Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E19
         (507 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    35   0.029
AF026215-2|AAB71324.2|  533|Caenorhabditis elegans Udp-glucurono...    31   0.36 
U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical...    28   3.4  
AF067220-6|AAC16980.2|  303|Caenorhabditis elegans Hypothetical ...    28   4.5  

>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = -1

Query: 477 VLIYQFLLMGFHSIIMYNQFLLFNIITIVMILFSFPYVH 361
           +++Y F L GF  +  YN  +L  ++TI +++FS   V+
Sbjct: 40  IIVYSFFLYGFRLLFHYNAKILMILLTIFILIFSLDIVY 78


>AF026215-2|AAB71324.2|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein36 protein.
          Length = 533

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 459 LLMGFHSIIMYNQFLLFNIITIVMILFSFPYVHFIWVHK 343
           +L+ F SI++     + N ITI  +L  FP V FIW ++
Sbjct: 301 VLVSFGSIMLSKDMPINNKITIATVLGKFPDVTFIWKYE 339


>U52003-2|AAY43981.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK381.8 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 170 IIPLSNKLFISEPRHIQV-RHTSLDSIFSWTIVIILF 63
           I+  S  LF+S  RHI++ R T L  IF   ++++LF
Sbjct: 13  IVEESQILFVSTERHIRIMRRTKLLVIFLTLLIVVLF 49


>AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical
           protein C24H12.1 protein.
          Length = 577

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 196 CTGLKIIMQDP-LPSNICNICLDKLTVAYNFKANCLQT---DRKLWTYFSKLDFVN 351
           C  +K++  D  + +      L    + Y F  NCL     ++KLW    +LDF N
Sbjct: 198 CHFVKLLGDDSYISTEDMEFILKNFDLKYGFSNNCLHRAGFNKKLWVNIPRLDFQN 253


>AF067220-6|AAC16980.2|  303|Caenorhabditis elegans Hypothetical
           protein C33E10.8 protein.
          Length = 303

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -1

Query: 465 QFLLMGFHSIIMYNQFLLFNIITIVM 388
           +FLL+G    I YN FLLFN   I M
Sbjct: 191 EFLLIGPSFSIKYNDFLLFNTSRIEM 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,892
Number of Sequences: 27780
Number of extensions: 248821
Number of successful extensions: 757
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)