Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E18
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 247 2e-66
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 245 5e-66
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.71
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 5.0
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 26 6.6
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 26 6.6
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.8
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 247 bits (604), Expect = 2e-66
Identities = 114/211 (54%), Positives = 156/211 (73%)
Frame = +1
Query: 121 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 300
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77
Query: 301 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 480
E SFRK +L ED+QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+
Sbjct: 78 EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRI 137
Query: 481 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 660
F IGFT++ +KT YAQ +Q+RAI +KM ++I ++E+V KLIP+ I + I
Sbjct: 138 FVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAI 197
Query: 661 EKACHGIYPLRDVCIRKVKVLKRPRFEISKL 753
EKA + IYPL++V +RKVK+LK P+ + KL
Sbjct: 198 EKATNNIYPLQNVFVRKVKILKAPKHDAQKL 228
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 245 bits (600), Expect = 5e-66
Identities = 113/211 (53%), Positives = 158/211 (74%)
Frame = +1
Query: 121 IVDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDA 300
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDE-- 77
Query: 301 ERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRV 480
E +FRK +L ED+QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RV
Sbjct: 78 EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRV 137
Query: 481 FCIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDI 660
F IGFT + +KT YAQ +Q+RAIR+KM ++I +S +RE+V KLIP+ I ++I
Sbjct: 138 FVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREI 197
Query: 661 EKACHGIYPLRDVCIRKVKVLKRPRFEISKL 753
E+A I+PL++V +RKVK+LK P+ + KL
Sbjct: 198 ERATGSIFPLQNVLVRKVKILKAPKHDAQKL 228
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.71
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +1
Query: 256 VFEVSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 429
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 430 IEANIDVKTT 459
+E + D++TT
Sbjct: 144 LETSKDLETT 153
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 577 EIITRDVTSSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 708
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.0
Identities = 33/126 (26%), Positives = 46/126 (36%)
Frame = +2
Query: 311 SASSDLSLRMSRDVMFSAISTAWTSPLINSDGW*RNGRHXXXXXXXXXXXXDMSYVFSAS 490
S+SS S S S+ S++ +SP S + MS S S
Sbjct: 275 SSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTI-SSSSSSSSSFSSTLSSSSMSSSSSFS 333
Query: 491 VSPTRIRSANARHATLSIPKSAQSGKKCVKSSRAM*PVQSFVKS*TS*FLTPSLRISKRR 670
SPT S + ++ S S KSS + S S +S LT S S R
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393
Query: 671 VTVSTH 688
+ S+H
Sbjct: 394 ASSSSH 399
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +1
Query: 481 FCIGFTNKDTLSQRKTCY 534
FC G NKDT+ K C+
Sbjct: 475 FCDGIVNKDTVMTSKACF 492
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 358 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 531
L + + + +T +++++ + N + K YV ++ G NK+T S RKTC
Sbjct: 1685 LLSTYMVGFSTSIIQYIIHLILLEFDFNGNNKKQKEYVTQLILSGLLNKNTNSIRKTC 1742
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -1
Query: 168 RRFNIVPVFTGERINNLLLNTLLASFRKAFIFTDRFVRI 52
R N+V VF G+ + N LN + + +FT+ + +
Sbjct: 172 RTENVVKVFQGKNVKNDSLNLRVRVWITGIVFTEDIINV 210
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 379 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 477
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,159,806
Number of Sequences: 5004
Number of extensions: 64661
Number of successful extensions: 178
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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