Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E18
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   281   5e-76
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    30   1.5  
U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine re...    29   4.7  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  281 bits (688), Expect = 5e-76
 Identities = 133/210 (63%), Positives = 165/210 (78%)
 Frame = +1

Query: 124 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADSDAE 303
           VDPF+RK+WYD+KAP+MF  RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL   +++E
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76

Query: 304 RSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 483
             FRKF+LIAEDVQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF
Sbjct: 77  ADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVF 136

Query: 484 CIGFTNKDTLSQRKTCYAQHTQVRAIRKKMCEIITRDVTSSELREVVNKLIPDSIAKDIE 663
            I FT K     +KT Y + +++R IR +M   I ++VT  +L+EVV+KLIPDSI KDIE
Sbjct: 137 VIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIE 196

Query: 664 KACHGIYPLRDVCIRKVKVLKRPRFEISKL 753
           K C  +YPL++V IRKVK++KRP+ ++ +L
Sbjct: 197 KTCSKLYPLQEVYIRKVKIIKRPKVDLGRL 226


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -2

Query: 266  TSKTRPFRPSDAIFVPWVRLTRVVPTCLLVNMDGA 162
            TSK +P R  D I V   R T     CL V   GA
Sbjct: 2175 TSKAQPIRSDDVISVAGTRSTETTMKCLAVQFTGA 2209


>U50191-6|AAK31554.2|  235|Caenorhabditis elegans Hypothetical
           protein T14B4.8 protein.
          Length = 235

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 233 AIFVPWVRLTRVVPTCLLVNMDGALTSYQSLRVKG 129
           + F+P++R  R VPT  +++ +G +  Y +L   G
Sbjct: 119 SFFIPFLRPRRTVPTFSIIDWNGEVLGYYALASDG 153


>AF016415-8|AAW88415.1|  297|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 32 protein.
          Length = 297

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -2

Query: 458 VVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQRTLRPWTSSAISL 321
           V +  ++ ++ V H F+ H  L V   +PW    T R   + AISL
Sbjct: 60  VYIIFVILTMEVPHLFSNHRGLIVTLGLPWSNFATCRSAIALAISL 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,741,304
Number of Sequences: 27780
Number of extensions: 383573
Number of successful extensions: 1067
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)