Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E16
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1127 + 34292894-34293284,34293948-34295443 29 1.6
01_06_0226 - 27684093-27685091 29 2.8
04_04_1299 + 32450998-32451134,32451575-32452304,32452856-324530... 28 3.7
12_01_0825 - 7611594-7611728,7612061-7612276,7612505-7612589,761... 28 4.9
04_01_0053 + 551027-553024 27 6.5
01_07_0230 + 42170382-42170408,42170532-42170648,42171930-421721... 27 6.5
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 27 6.5
11_04_0369 - 16885918-16886080,16886235-16886671,16886767-168870... 27 8.6
08_02_0433 - 17114880-17114972,17115053-17115149,17115244-171153... 27 8.6
>02_05_1127 + 34292894-34293284,34293948-34295443
Length = 628
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 359 NFILPLFRQPSLPKGALAPRTRRVT 285
+F+ LFR+P++P G L P T VT
Sbjct: 399 DFLTGLFRKPTVPAGILPPTTNLVT 423
>01_06_0226 - 27684093-27685091
Length = 332
Score = 28.7 bits (61), Expect = 2.8
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 199 EDDGREQTANRGRSSRWGRPATRGCPDXXXXXXXXXXXXPLGSEGWRKSGRIKLALDSHL 378
EDDG +Q+A+R SSR G A G G G G + A+++
Sbjct: 203 EDDGSQQSASRSVSSRSGGVAAAG----AGGGGVSSSKRKRGGGGGGGFGELARAVETFA 258
Query: 379 EMY 387
EMY
Sbjct: 259 EMY 261
>04_04_1299 +
32450998-32451134,32451575-32452304,32452856-32453053,
32453398-32454065,32454555-32454978,32455917-32456009,
32456101-32456295,32456378-32456470,32456718-32456930,
32457015-32457104,32457239-32457400
Length = 1000
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 362 ANFILPLFRQPSLPKGALAPRTRRVTLPSGQPLVA 258
+NFILPL QP+L K R V P +VA
Sbjct: 712 SNFILPLQNQPALEKDRYKIRQAFVAAPGNSLIVA 746
>12_01_0825 -
7611594-7611728,7612061-7612276,7612505-7612589,
7613170-7613372,7613935-7615723,7616322-7616450,
7616825-7616928,7618725-7618779,7618860-7618975
Length = 943
Score = 27.9 bits (59), Expect = 4.9
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 406 FDNCYLSTSLDVNPMPTLFCHSFANLRSPKELL-PLAHVVSLSHQDSPSWLVFPIEKTFL 230
F +C L TS D+ L +RS + P+ S +H +SP L+ K+F+
Sbjct: 544 FVSCDLVTSGDLQEYSPLGIRQL--MRSTMNVCTPMRLWGSPTHDESPDILLKSAAKSFI 601
Query: 229 CLPSV 215
C PS+
Sbjct: 602 CTPSI 606
>04_01_0053 + 551027-553024
Length = 665
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = -2
Query: 341 FRQPSLPKGALAPRTRR 291
FR P LP GALAPR R
Sbjct: 97 FRPPPLPDGALAPRRLR 113
>01_07_0230 +
42170382-42170408,42170532-42170648,42171930-42172119,
42172250-42172369,42172448-42172740,42172872-42172966,
42173075-42173181,42173514-42173602,42173809-42173895,
42174053-42174077,42174659-42174966,42175352-42175657
Length = 587
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 207 WTGTDGKQRKVFSMGKTSHEGLS*WESDTTC 299
W DGK RK+ S G +S W T C
Sbjct: 526 WASFDGKDRKLLSPGDALICSISPWPVPTAC 556
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 500 SSIRLALNCWPSEIYTMITYATLSY 426
SS+ LA+NCWPS + TY + Y
Sbjct: 410 SSLPLAVNCWPS-VSGNETYVNIEY 433
>11_04_0369 -
16885918-16886080,16886235-16886671,16886767-16887028,
16887050-16887353,16887771-16888166,16888531-16888579,
16889303-16889737
Length = 681
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 146 ALSTSTNPSTLVQGLSFMKMMDGNRRQTEEGLLDGED 256
+L +T PST +GL ++M++ R+ L D E+
Sbjct: 24 SLQVATAPSTTSEGLEDLRMLERTMRRIHATLHDAEE 60
>08_02_0433 -
17114880-17114972,17115053-17115149,17115244-17115306,
17115765-17115918,17115992-17116178,17116567-17116871,
17117638-17117803,17118261-17118652,17119032-17119208,
17119565-17119604,17119762-17119809,17122393-17122428,
17122832-17123104
Length = 676
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 500 SSIRLALNCWPSEIYTMITYATLSY 426
SS+ L++NCWPS I TY + Y
Sbjct: 536 SSLPLSVNCWPS-ILGNETYVNIEY 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,859,615
Number of Sequences: 37544
Number of extensions: 332376
Number of successful extensions: 938
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -