Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E16
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.6  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 208 HHLHKRQPLYQ 176
           HHLH  Q LYQ
Sbjct: 74  HHLHHHQVLYQ 84


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -2

Query: 98  SPSSISLTRSGIFSASIIS-ICFYEKQQQ 15
           SPS+ S+TR+G+ S    S IC   K+ Q
Sbjct: 334 SPSNPSITRTGLSSVRDSSIICGGNKRSQ 362


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 235  RSSRWGRPATRGCP 276
            RSS W RP+T+  P
Sbjct: 1902 RSSLWSRPSTQNNP 1915


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 235  RSSRWGRPATRGCP 276
            RSS W RP+T+  P
Sbjct: 1898 RSSLWSRPSTQNNP 1911


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 491 RLALNCWPSEIYTMITYATLSYVL 420
           +L L+CW  E     T+A L+  L
Sbjct: 869 QLMLDCWQKERTHRPTFANLTQTL 892


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 266 LVAGLPHREDLPLFAVCSRP 207
           ++AG+  +E+LP F   ++P
Sbjct: 351 MIAGMKIKEELPHFVGSNKP 370


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 135 GVGQRSGKPQILESIFYIVNAEWHIF 58
           G+G  +       +++YIV   W IF
Sbjct: 61  GIGYAAAVMSCWMNVYYIVILAWAIF 86


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 243 SMGKTSHEGLS*WESDTT 296
           S G    EGL  W+SDT+
Sbjct: 211 SSGLQPGEGLPMWKSDTS 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,245
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)