Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E15
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   120   2e-28
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.9  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    27   2.9  
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    26   3.8  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   5.1  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   6.7  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   6.7  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    25   6.7  
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar...    25   6.7  
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    25   8.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  120 bits (288), Expect = 2e-28
 Identities = 55/109 (50%), Positives = 76/109 (69%)
 Frame = +2

Query: 104 KSNYFVKIIQLLDEYPKCFIVGADNVCSQQMQQIRISLRGHSIVLMGKNTMMRKAINDHL 283
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG + ++MGKNTM+R+A+   +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 284 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 430
              P LE+LLP ++GNVGFVFT  DL +VR+ ++ N + APARP AIAP
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAP 116



 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 43/64 (67%), Positives = 49/64 (76%)
 Frame = +3

Query: 432 LSVVIPAHNTGLGPEKTSFFQALSIPTKNFQGTIEIINDVHILKPGDTVGASEATLLNML 611
           L V +PA NTG+ P KTSFFQAL IPTK  +GTIEI +DVH++     VG SEATLLNML
Sbjct: 117 LDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNML 176

Query: 612 NISP 623
           NISP
Sbjct: 177 NISP 180


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 541 IISIVPWKFLVGMERAWKKEVFSGPR 464
           IIS  P K+L+G+  AW  E  S  R
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRER 314


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 303 KNCFLTSREMLALSSPVEILLMCVINCWRTKSKPRLVLEPLLHLSVVIPAHNTGLGPEKT 482
           KN     RE LA  +  E+L + +         P   LEP+L + + +   +       +
Sbjct: 34  KNVLALCREYLASENVKEVLNLFLTRLPLLAQAPEKELEPILAVFINLIQESAAFEDHVS 93

Query: 483 SFFQAL-SIPTKNFQGTIEIINDVHIL 560
            F QAL  I  +N   T  I++ + IL
Sbjct: 94  KFCQALEQIADQNNNLTPAILSVLSIL 120


>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 458 VMSGNDDRQMEQWLQDEPGLGL 393
           ++SG D + +  W+ D  GLGL
Sbjct: 608 IISGRDQQFLRNWMDDIKGLGL 629


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 458 VMSGNDDRQMEQWLQDEPGLGLCS 387
           ++SG   + ME+W+ D   LGL S
Sbjct: 619 ILSGRSQKFMEEWMGDISELGLSS 642


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 230 IVLMGKNTMMRKAINDHLETNPALEKLLPHIKGNVGFVFTRGDLV 364
           I L+G N ++     DH++ +P ++   P+I      V ++GDLV
Sbjct: 401 IPLLGMNKVI--LAGDHMQLSPNVQSKRPYISMFERLVKSQGDLV 443


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 224 HSIVLMGKNTMMRKAINDHLE 286
           HS++   KNT   KA+  HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 2   HEAQRSVRICLVLKFLRSPYFTQSKMGREDNATWKSNYFV 121
           +E QR + +C V      PYF++  +   D A W   +FV
Sbjct: 14  YENQRGIMLCGV------PYFSEKSLLNFDPAPWVDQHFV 47


>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
           Byr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 56  PYFTQSKMGREDNATWKSNY 115
           PYF Q+ M   D A+W SN+
Sbjct: 318 PYFQQALMINVDLASWASNF 337


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 372 VINCW-RTKSKPRLVLEPLLHLSVVIPAHNTG--LGPEKTSFFQALSIPTKN 518
           +I  W +   KP   +EP + L+ V P   TG  L   + S   A  IP+ N
Sbjct: 306 IIKIWEKDTGKPFSSIEPTVELNDVCPIEGTGLILTANEGSPMHAFYIPSLN 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,720
Number of Sequences: 5004
Number of extensions: 61262
Number of successful extensions: 211
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)