Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E15
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 113 1e-25
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 112 2e-25
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 112 2e-25
04_04_0078 + 22573413-22573554,22573637-22573959,22574681-225753... 31 0.98
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 29 3.0
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 3.0
02_04_0427 - 22809481-22810335 29 3.0
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 5.2
12_01_0686 - 5855216-5858263 28 6.9
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 28 6.9
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 27 9.2
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 27 9.2
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 113 bits (271), Expect = 1e-25
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Frame = +2
Query: 83 REDNATWKSNYFVKIIQLLDEYPKCFIVGADNVCSQQMQQIRISLRGHSIVLMGKNTMMR 262
+ A K Y K+ QLLDEY K I ADNV S Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 263 KAINDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 430
+ I H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAP 121
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +3
Query: 432 LSVVIPAHNTGLGPEKTSFFQALSIPTKNFQGTIEIINDVHILKPGDTVGASEATLLNML 611
+ VV+P NTGL P +TSFFQ L+IPTK +GT+EII V ++K GD VG+SE+ LL L
Sbjct: 122 VDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKL 181
Query: 612 NISP 623
I P
Sbjct: 182 GIRP 185
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 112 bits (270), Expect = 2e-25
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Frame = +2
Query: 83 REDNATWKSNYFVKIIQLLDEYPKCFIVGADNVCSQQMQQIRISLRGHSIVLMGKNTMMR 262
+ A K Y K+ QLLDEY K I ADNV S Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 263 KAINDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 430
+ I H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAP 121
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +3
Query: 432 LSVVIPAHNTGLGPEKTSFFQALSIPTKNFQGTIEIINDVHILKPGDTVGASEATLLNML 611
+ VV+P NTGL P +TSFFQ L+IPTK +GT+EII V ++K GD VG+SE+ LL L
Sbjct: 122 VDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKL 181
Query: 612 NISP 623
I P
Sbjct: 182 GIRP 185
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 112 bits (270), Expect = 2e-25
Identities = 59/118 (50%), Positives = 78/118 (66%), Gaps = 2/118 (1%)
Frame = +2
Query: 83 REDNATWKSNYFVKIIQLLDEYPKCFIVGADNVCSQQMQQIRISLRGHSIVLMGKNTMMR 262
+ A K Y K+ QLLDEY K I ADNV S Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 263 KAINDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 430
+ I H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAP 121
Score = 76.6 bits (180), Expect = 2e-14
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +3
Query: 432 LSVVIPAHNTGLGPEKTSFFQALSIPTKNFQGTIEIINDVHILKPGDTVGASEATLLNML 611
+ VV+P NTGL P +TSFFQ L+IPTK +GT+EII V ++K GD VG+SE+ LL L
Sbjct: 122 VDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKL 181
Query: 612 NISP 623
I P
Sbjct: 182 GIRP 185
>04_04_0078 +
22573413-22573554,22573637-22573959,22574681-22575313,
22575383-22575838
Length = 517
Score = 30.7 bits (66), Expect = 0.98
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 386 ENKVQAPARPGAIA--PFVCRHSRS*HWPWS*EDFFLPGSFHP 508
+N +A ARP A+A F C H+ W W + +PG P
Sbjct: 379 KNGSEAMARPYAVAVVAFTCLHTAGFGWSWGPLGWVIPGEIFP 421
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 92 NATWKSNYFVKIIQLLDEYPKCF 160
N +++Y VKII+LL EY CF
Sbjct: 64 NKNMRADYKVKIIELLKEYVDCF 86
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -1
Query: 427 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 320
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>02_04_0427 - 22809481-22810335
Length = 284
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 295 WICFKMVIDGFPHHGVFAHEHNAVTTQ*N 209
W F+ I FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 322 DVRKQFFESWICFKMVIDGFPHHGVFAHEHNAVTTQ*NT 206
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +3
Query: 270 SMTILKQIQLSKNCFLTSREMLALSSPVEILLMCVINCWRTKSKPRLVLEPLLHL-SVVI 446
++T L +Q S NC L+ ++ + E++ + + NC + P +L L HL ++V+
Sbjct: 408 NLTSLTVLQFS-NCGLSGHVPSSIGNLRELIKLALYNCKFSGKVPPQILN-LTHLETLVL 465
Query: 447 PAHNTGLGPEKTSFFQALSIPTKNFQGTIEIIND 548
++N E TSF + ++ N ++ D
Sbjct: 466 HSNNFDGTIELTSFSKLKNLSVLNLSNNKLVVVD 499
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 2 HEAQRSVRICLVLKFLRSPYFTQSKMGREDNATWKSNYFVKIIQLLDEYPK 154
H + + CL L+FL T + R T K + II++L+ YP+
Sbjct: 803 HASSADIDKCLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 185 SIHCPHPL*NILGIRPTVG 129
SI CP L +++GI+PTVG
Sbjct: 177 SILCPSSLNSVVGIKPTVG 195
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 185 SIHCPHPL*NILGIRPTVG 129
SI CP L +++GI+PTVG
Sbjct: 176 SILCPSSLNSVVGIKPTVG 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,656,776
Number of Sequences: 37544
Number of extensions: 416243
Number of successful extensions: 1095
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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