Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E14
         (517 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   5.1  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   5.1  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   6.7  

>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 219 AITFFFLENVIQIIPTTRKISTGNF 145
           A  F  +ENVI++ P T ++STG F
Sbjct: 41  ACLFKRVENVIEMEPKTEQMSTGRF 65


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 458 IKIVQRNKM*ELTKIHNNLHKVQDIYKVYKDYLKNVILI 342
           IK++++  + E   + N LH   ++ + Y +YL+ + L+
Sbjct: 865 IKLMKKVNILESRLLSNPLHNFSELEEKYAEYLRKLALL 903


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 188 ITFSKKKNVIALFKNV 235
           I FSKK NV +LF NV
Sbjct: 56  IHFSKKSNVFSLFSNV 71


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 176 GIICITFSKKKNVIALFKN 232
           GI+ + FSK+K +  +F+N
Sbjct: 131 GIVVLVFSKQKGITVVFRN 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,416
Number of Sequences: 5004
Number of extensions: 30194
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)