Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E13
(318 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe... 26 1.2
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 1.6
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 25 2.8
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 2.8
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 3.7
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 24 4.8
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 24 6.4
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 24 6.4
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 24 6.4
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 24 6.4
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 8.5
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 23 8.5
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 23 8.5
>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 1.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 317 LSFIIVPRADCTSPASNVWCEYFSL 243
L + I+ R C SP ++ WC+Y +L
Sbjct: 14 LIYFIIFRLCCCSPQTSHWCKYPAL 38
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 1.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 187 ARGGRP*TASIFQVLESSVTTWWSGARTPGLASAPR 80
+RG RP SI +V W GARTP +A+ R
Sbjct: 793 SRGIRP--GSISTADGPNVPNWAQGARTPAVANGSR 826
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.0 bits (52), Expect = 2.8
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +1
Query: 37 PYDFSSDEEAEPILRAAHSQDPGSSHRSTRSSQKTLEPERLKQFKVALHELFRSERVNSL 216
P ++S EE E L +D S++ Q L E+L +V H RS+ L
Sbjct: 168 PLEYSEYEEVES-LDVKSEKDTESNNLG----QNELLKEQLATPEVETH---RSKEETIL 219
Query: 217 PLDRVTKFLNEKYSHQTFDAG 279
DR+ + N Y H D G
Sbjct: 220 HKDRLFDYQNRSYMHVPNDVG 240
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -3
Query: 154 FQVLESSVTTWWSGARTPGLASAPRGVSARPPRPMRSH 41
F++ S ++ + SG+ +P S+P +S P P S+
Sbjct: 207 FRISNSHISPFASGSFSPFATSSPNFLSTSTPAPPNSN 244
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 24.6 bits (51), Expect = 3.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 46 FSSDEEAEPILRAAHSQDPGSSHRSTRSSQKTLEPERLKQFKVALHE 186
F D + + +HSQ+P SS S+ SSQ + L QF++ +E
Sbjct: 114 FEKDNARDIPQQPSHSQNPSSS-SSSSSSQSSQHSTHL-QFQIPSNE 158
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +1
Query: 10 YLQATDRQDPYDFSSDEEAEPILRAAHSQDPGSSHRSTRSSQKTLE 147
Y +TD P S + P + + S + HR+ +QK E
Sbjct: 440 YKDSTDEPPPITTSGVQYTSPTVSDSASNEKEQEHRAQNEAQKEEE 485
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 23.8 bits (49), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 131 DDLVERCEDPGSCECAARSIGSASSSDEKSYGSCLS 24
+DL+E CE P + S ++ DEK S LS
Sbjct: 223 EDLLEFCETPCKSQPIFLSSSHVNNWDEKDVPSSLS 258
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 23.8 bits (49), Expect = 6.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 287 CTSPASNVWCEYFSL 243
C SP + +W EYF +
Sbjct: 62 CGSPFTRIWLEYFEV 76
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 83 ARSIGSASSSDEKSYGSCLSVA 18
+ SIGS S D KS CL VA
Sbjct: 251 SESIGSVCSQDLKSRPDCLIVA 272
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 23.8 bits (49), Expect = 6.4
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +1
Query: 112 HRSTRSSQKTLEPERLKQFKVALHELFRSERVNSLPLDRVTKFLNEKYSHQTFDAG 279
H R K + LK F + ++ + R++S ++ ++ FLNEK+ +DAG
Sbjct: 547 HGGVRFFVKQEISQLLKDFSLKANKDICNFRIHSNGVNIISPFLNEKH---FYDAG 599
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.4 bits (48), Expect = 8.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -3
Query: 103 PGLASAPRGVSARPPRPMRSHTGLVYP*PGD 11
P P G + PP P+ + + P PGD
Sbjct: 1718 PSAPPMPAGPPSAPPPPLPASSAPSVPNPGD 1748
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 23.4 bits (48), Expect = 8.5
Identities = 17/73 (23%), Positives = 28/73 (38%)
Frame = +3
Query: 45 LLIGRGGRADTPRGALARPGVLAPLHQVVTEDSRT*KIEAVQGRPPRAVPLRESELPPTG 224
+LI R +P A+ L L VT + A+Q PR + + + PP
Sbjct: 33 ILIFLQSRGTSPNDAIPIKSPLERLANSVTSPEKPTVRTAIQKDSPRRKQIDDDQTPPKH 92
Query: 225 PRHQVPQREVLAP 263
+ V++P
Sbjct: 93 LKRSFQNVTVVSP 105
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 23.4 bits (48), Expect = 8.5
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Frame = -2
Query: 284 TSPASNV---WCEYFSLRNLVTRSSGREFTLSERNSSWRA 174
T+P N+ W +Y + N V R++ R+F ++E++ + A
Sbjct: 218 TTPIHNIEKLWRDYDAFENSVNRATARKF-VAEKSPVYMA 256
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.126 0.349
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,187,118
Number of Sequences: 5004
Number of extensions: 20459
Number of successful extensions: 72
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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