Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E10
         (528 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   7.0  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   7.0  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   9.2  

>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 312 TENWSDSPYQNLAARNVMS*SRV 380
           TE W D+P+ +LAA   +S  +V
Sbjct: 314 TERWGDAPFHSLAAGLFLSKEQV 336


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 186 PLQLSILAETISEVSYAFETTMARPSV 106
           PL  S+ +ETI+  S+  ETT   P+V
Sbjct: 60  PLHTSV-SETITSTSFVTETTTVTPTV 85


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 192 EHPLQLSILAETISEVSYAFETTMARPSVIK 100
           EHP+Q ++ A T +   ++ ETT A   V K
Sbjct: 443 EHPVQEAVTAPTETAHDFSKETTTASKRVSK 473


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 68  TYRHRLTSTLLARLIRNAYKP 6
           T  H+L STL+ +LI N  +P
Sbjct: 382 TCTHKLASTLIFKLINNKQEP 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,989
Number of Sequences: 5004
Number of extensions: 33173
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)