Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E10
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0675 - 5028910-5030379                                           30   1.3  
11_06_0708 + 26475306-26478404                                         28   5.3  
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     28   5.3  
11_06_0696 + 26358713-26359779,26359826-26360110,26360177-263603...    27   9.3  
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554     27   9.3  

>02_01_0675 - 5028910-5030379
          Length = 489

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -2

Query: 359 IPRG*VLIGGVAPILGHLHPTKPILVARRL*TSPLAARSLV 237
           +P+  V IGG A   G +HP+   +VAR L T+P+ A ++V
Sbjct: 332 LPQRVVGIGGTA---GMVHPSTGYMVARTLATAPIVADAIV 369


>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 170  IESCRGCSL-NRLPQVKRFVMDDAPNYERLEV 262
            ++SC+G  + + LPQV+  +++  PN   +E+
Sbjct: 957  VQSCQGLEIISNLPQVRELLVNHCPNLRHVEM 988


>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 170 IESCRGCSL-NRLPQVKRFVMDDAPNYERLEV 262
           ++SC+G  + + LPQV+  +++  PN   +E+
Sbjct: 773 VQSCQGLEIISNLPQVRELLVNHCPNLRHVEM 804


>11_06_0696 +
           26358713-26359779,26359826-26360110,26360177-26360356,
           26360516-26360585,26361051-26361950
          Length = 833

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 167 RIESCRGCS-LNRLPQVKRFVMDDAPNYERLE 259
           ++E C G   ++ LPQV+   +++ PN   +E
Sbjct: 757 QVEGCEGLERVSNLPQVRELFVNECPNLRHVE 788


>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
          Length = 449

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 332 GVAP--ILGHLHPTKPILVARRL*TSPLAARSLVHRP*QISSLAVGGSTNTPYS-SQFSQ 162
           G+ P  I   + P  PI  A    +SP+A RSL+  P   +++AV      P+S S+  Q
Sbjct: 17  GIPPTSIAAPVDPPHPIFGAAS--SSPIAHRSLLPTPSVATAVAVQVDPPPPHSESELVQ 74

Query: 161 KLYLKYHMHLK 129
            L  KY + ++
Sbjct: 75  ALSDKYRLPVR 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,711,254
Number of Sequences: 37544
Number of extensions: 207239
Number of successful extensions: 420
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)