Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E10
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical ...    28   4.8  
U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical p...    27   6.3  
AL032642-2|CAA21653.1|  332|Caenorhabditis elegans Hypothetical ...    27   8.3  
AL032642-1|CAA21651.2|  461|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical
           protein Y76B12C.3 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 161 SARIESCRGCSLNRLPQVKRFVMDDAPNY--ERLEVKFINGAPP 286
           +A +E C  C+L R PQV+ FV  D       +++VK + G  P
Sbjct: 76  TAILEVCE-CNLARFPQVQAFVHKDMARQFGGKVKVKHVRGVRP 118


>U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical
           protein T26A5.2a protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 128 VSNAYDTSDIVSARIESCRGCSLNRLPQVKRFVMDDAPNYERLEV 262
           +SNA  TS   S+R E      L+ +P VKRF   D+   +++ +
Sbjct: 1   MSNASSTSSGRSSRAEVLWADVLSHIPFVKRFTTPDSRKEQKVRI 45


>AL032642-2|CAA21653.1|  332|Caenorhabditis elegans Hypothetical
           protein Y48A6C.3 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 312 TENWSDSPYQNLAAR--NVMS*SRVE---DSLRNLQSQIYKQK*DIVITLQSSKNA 464
           TE W+   Y  LAA    VMS   +E      +NL+ +  +Q  D  I++Q+ KNA
Sbjct: 175 TEAWNTDSYNILAAHWAAVMSGKAIEYLEGDEKNLEMRHCRQYLDRAISIQAGKNA 230


>AL032642-1|CAA21651.2|  461|Caenorhabditis elegans Hypothetical
           protein Y48A6C.1 protein.
          Length = 461

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 312 TENWSDSPYQNLAAR--NVMS*SRVE---DSLRNLQSQIYKQK*DIVITLQSSKNA 464
           TE W+   Y  LAA    VMS   +E      +NL+ +  +Q  D  I++Q+ KNA
Sbjct: 179 TEAWNTDSYNILAAHWAAVMSGKAIEYLEGDEKNLEMRHCRQYLDRAISIQAGKNA 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,362,858
Number of Sequences: 27780
Number of extensions: 184868
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)