Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E09
         (169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   1.0  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   1.3  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   1.8  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    23   4.1  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    23   5.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    23   5.4  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   7.1  
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    22   9.4  

>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/41 (21%), Positives = 24/41 (58%)
 Frame = +3

Query: 30  SIIKSFLIFDRIVPYIFDLAITNKVSTKNYVVDLLKKKRVV 152
           +I + + ++ + VP+++DL IT+ +   +  +  L  K+ +
Sbjct: 25  TIQEEYKLWKQNVPFLYDLVITHALEWPSLTIQWLPDKKTI 65


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +3

Query: 24  EGSIIKSFLIFDRIVPYIFD 83
           + +++ SFLI  R++PY+++
Sbjct: 87  KNALLNSFLILTRLLPYLYE 106


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +3

Query: 33   IIKSFLIFDRIVPYIFDLAITNKVSTKNYVVDLLKKKRVVY 155
            I+ +  +F R  P++FDL+  + +         ++++R +Y
Sbjct: 1019 IMSTLFVFSRAFPFLFDLSYLHLLKPYLRSASTIEEQRFLY 1059


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 141 SFLTNPLHSF*LKLYSLLLDQKYKERFYRILKM 43
           S +TNPLH        LL +   +E F RIL M
Sbjct: 93  SIVTNPLHGLADLSCMLLCNLAKEEDFARILDM 125


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -2

Query: 105 KLYSLLL--DQKYKERFYRILKMTLL 34
           +L+ LL   DQK+   FY +L+ TL+
Sbjct: 728 RLFDLLRFNDQKFAPAFYNVLQNTLV 753


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 6    FTNLYDEGSIIKSFLIFDRIVPYIF 80
            FTN++    +I + L    I+PY F
Sbjct: 1619 FTNVFFSDVLIPALLAAGAIIPYFF 1643


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 12  NLYDEGSIIKSFLIF 56
           N YDEGSIIK+   F
Sbjct: 610 NPYDEGSIIKNCKTF 624


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 21  DEGSIIKSFLIFDRIVPYIFDLAITNKVSTKNY 119
           D+GS I    +  +I     D +ITN VS + +
Sbjct: 11  DDGSDIDDAALLQKINSLPIDQSITNSVSLEKH 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,662
Number of Sequences: 5004
Number of extensions: 9641
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)