Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E08
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei... 27 0.78
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 27 1.0
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 26 2.4
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 25 3.1
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 25 3.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 5.5
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 24 7.2
SPBC543.08 |||phosphoinositide biosynthesis protein |Schizosacch... 24 9.6
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 24 9.6
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 24 9.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 24 9.6
>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 968
Score = 27.5 bits (58), Expect = 0.78
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 264 LRFEQMQLEDDMDVHRKESKSTVHYSKAWDL 356
LR+ ++QL + D+H+K S H K DL
Sbjct: 137 LRYLRLQLSEKEDLHKKLSVDNAHLIKQLDL 167
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 1.0
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = -3
Query: 357 LNPMPLSNVQYFLILFCAHPYHLLTAFVQTSTMDRLLQSQHSI 229
+N + L +++ F+I C H +H T F+ T +++ Q+ +
Sbjct: 75 VNEIQLISIEVFIIGICKHKFHSSTVFLCLGT--HIMEGQYIV 115
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 2.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 217 NILINGVLALKKSIHC*GLNKCS*KMIWMCTEKNQKVLYI 336
N+LI L L I G+ + S M+W C KN ++ +I
Sbjct: 200 NLLIKDSLPLDLLIRTSGVERLSDFMLWQC-HKNTEIKFI 238
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 97 YEWKCIRKLKSKMVSKARSIQSSFEN*YSHXLKY 198
++W +++L + + + Q F N YS LKY
Sbjct: 145 FDWGLLQRLDDEKMQYTSTSQYGFNNQYSGLLKY 178
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 234 SAGFEEVDPLLRFEQMQLEDDMDVHRKESKSTVHYSKAWDLKRNSIL 374
S F+E + L FE++ E MD++ E+ S + S L +N L
Sbjct: 676 STDFDECERLY-FEELSYERVMDIYEMETASGIVVSVGGQLPQNIAL 721
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 90 HNKNIHSKYISC-NILFCGCNLR 25
+ + IH + S N+L CGC LR
Sbjct: 425 NGRKIHEEPFSISNVLLCGCTLR 447
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.2 bits (50), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 243 FEEVDPLLRFEQMQLEDDMDVHRKESKSTVHYS 341
FE+V+ L + + L DD DV+R + YS
Sbjct: 723 FEDVNSSLEYCENMLLDDYDVYRTKLLHKAGYS 755
>SPBC543.08 |||phosphoinositide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 250
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 324 STVHYSKAWDLKRNSILNKY 383
S V++ AWD KRN I K+
Sbjct: 73 SLVYFYHAWDQKRNKIDFKF 92
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 23.8 bits (49), Expect = 9.6
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Frame = +3
Query: 21 RGVD--YNHRIIYYNLYTLSEYFYYV 92
RG D YN Y+L TL E F YV
Sbjct: 208 RGADVPYNPVFFAYSLVTLDEAFLYV 233
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 84 KNIHSKYISCN 52
KNI SKY++CN
Sbjct: 53 KNIDSKYVACN 63
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.8 bits (49), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 336 YSKAWDLKRNSILNKY 383
Y+ W L+ S+LNKY
Sbjct: 1331 YNSRWKLRFQSVLNKY 1346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,542,398
Number of Sequences: 5004
Number of extensions: 28574
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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