Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E08
         (386 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0611 + 30344637-30344652,30344743-30344883,30345258-303455...    30   0.74 
06_01_0463 - 3293189-3294340,3294424-3294687,3294904-3295164           28   3.0  
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380...    27   3.9  
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117...    27   6.9  

>02_05_0611 +
           30344637-30344652,30344743-30344883,30345258-30345572,
           30345907-30346053,30346446-30346543,30346719-30346805,
           30346870-30347080,30347589-30347674
          Length = 366

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +3

Query: 222 LNKWSAGFEEVDPLLRFEQMQLEDDMDVHRKESKSTVHYSKAWDL 356
           + KW   +++  P L+  Q ++++ +  H ++ +   HY + W L
Sbjct: 205 MKKWVLEYKQKRPGLKVLQQRIDEFITAHEEQEEQCSHYLRIWFL 249


>06_01_0463 - 3293189-3294340,3294424-3294687,3294904-3295164
          Length = 558

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 312 FCAHPYH--LLTAFVQTSTMDRLLQSQHSIY*DVP 214
           FCA   H  L++ FV+  ++DR+L +  S++  +P
Sbjct: 334 FCAEKTHKLLVSEFVENGSLDRVLSNHQSVFPVLP 368


>12_02_0272 - 16634765-16635004,16635412-16635457,16636107-16638098,
            16639478-16640286
          Length = 1028

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 103  WKCIRKLKSKMVSKARSIQSSFEN*YSHXLKYLVRVS 213
            WK +RK+K+ M   A    S F+N   H   Y++ VS
Sbjct: 984  WKAVRKIKATMCLPAIKSPSKFKN-SRHMSIYMIDVS 1019


>01_06_0789 -
           32010131-32010330,32010438-32010866,32011658-32011752,
           32011836-32011933,32012586-32012942,32013615-32013792,
           32013856-32013936,32014441-32014548,32014916-32015178
          Length = 602

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = -3

Query: 171 FKG*LDTSSLGHHFGLQFPNTFPFI*RHNKNIHSKYISCNILFCGC 34
           F+  + +S   +   ++     P + +HNK  H K   C   +C C
Sbjct: 195 FRPKIGSSPHANRNNMEAAGDLPLVGKHNKGCHCKKSGCLKKYCEC 240


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,102,427
Number of Sequences: 37544
Number of extensions: 153038
Number of successful extensions: 359
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)