Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E08
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    28   2.6  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    26   8.1  

>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +3

Query: 108 MY*EIEVQNGVQGSKYPIIL*KLILSXFEISSKSFMEHLNKWSAGFEEVDPLLRFEQMQL 287
           MY E ++  G Q   +   L ++I+     SSK +   L  W        P  RF Q   
Sbjct: 168 MYPECKI--GFQFETHAATLIRIIIGVGMRSSKPYPSALPNWRRKRRGRHPSSRFNQEVA 225

Query: 288 EDDMDVHRKE 317
            +DM+ H KE
Sbjct: 226 TNDMEHHIKE 235


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
           protein R31.1 protein.
          Length = 4063

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 216 EHLNKWSAGFEEVDPLLRFEQMQLEDDMDVHRKESKSTVHY 338
           EH++  +  F+  +  L   ++   +D+DV R + KS + Y
Sbjct: 227 EHVDNLNHAFDVAEKKLEIARLLDAEDVDVTRPDEKSIITY 267


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
           protein R31.1 protein.
          Length = 4063

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 216 EHLNKWSAGFEEVDPLLRFEQMQLEDDMDVHRKESKSTVHY 338
           EH++  +  F+  +  L   ++   +D+DV R + KS + Y
Sbjct: 227 EHVDNLNHAFDVAEKKLEIARLLDAEDVDVTRPDEKSIITY 267


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
           spectrin homolog Sma1 protein.
          Length = 4063

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 216 EHLNKWSAGFEEVDPLLRFEQMQLEDDMDVHRKESKSTVHY 338
           EH++  +  F+  +  L   ++   +D+DV R + KS + Y
Sbjct: 227 EHVDNLNHAFDVAEKKLEIARLLDAEDVDVTRPDEKSIITY 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,303,780
Number of Sequences: 27780
Number of extensions: 151614
Number of successful extensions: 407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)