Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E08
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.53 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = -1

Query: 152 LRALDTIL-DFNFLIHFHSYKDIIKIFT 72
           LR L+ ++ DF+ ++  + +KDIIKI T
Sbjct: 814 LRFLNEVISDFDAILDQNKFKDIIKIKT 841


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +3

Query: 252 VDPLLRFEQMQLEDDMDVHRKESKS---TVHYSK-AWDLKRNSIL 374
           V PLLRFE  +    +   R++S+S     H  + +W +K+ +++
Sbjct: 69  VYPLLRFENPETHHPIRHGRRQSRSMDLNAHREQMSWPVKKEAVV 113


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 192  EISSKSFMEHLNKWSAG 242
            E+++ S   HLN WS G
Sbjct: 1471 EVATNSITLHLNAWSDG 1487


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,670
Number of Sequences: 438
Number of extensions: 2043
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)