Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E07
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   132   7e-32
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   130   5e-31
04_04_0157 + 23165638-23166633                                         28   2.4  
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334...    27   7.2  
12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332     26   9.6  
02_02_0625 - 12339623-12339707,12339938-12340062,12340844-123409...    26   9.6  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  132 bits (320), Expect = 7e-32
 Identities = 63/115 (54%), Positives = 77/115 (66%)
 Frame = +2

Query: 50  ATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKX 229
           A   G    L+ +E+DV  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK 
Sbjct: 3   AVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWEKL 62

Query: 230 XXXXXXXXXXEDPADVFVISSRAFGQRAVLKFAGHTGATPIAGRFTPGAFTNQIQ 394
                     E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q
Sbjct: 63  QLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ 117


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  130 bits (313), Expect = 5e-31
 Identities = 64/113 (56%), Positives = 77/113 (68%), Gaps = 2/113 (1%)
 Frame = +2

Query: 62  GGLDLLALS--EEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 235
           GG    ALS  E+D+  MLAA  HLG +N +FQME YVYKRR DG ++INL +TWEK   
Sbjct: 5   GGAAARALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQL 64

Query: 236 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAGHTGATPIAGRFTPGAFTNQIQ 394
                   E+P D+ V S+R +GQRAVLKFA +TGA  IAGR TPG FTNQ+Q
Sbjct: 65  AARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQ 117


>04_04_0157 + 23165638-23166633
          Length = 331

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 225 FSHVRRRLITCVPSPRRL 172
           FSH+RRRL+  +P+P  L
Sbjct: 5   FSHLRRRLLAAIPNPNLL 22


>09_04_0594 -
           18831011-18831360,18831562-18832111,18832364-18833406,
           18833496-18833760,18835194-18835340,18835431-18835511,
           18835626-18835804,18835935-18836093,18836269-18836398,
           18836935-18837094,18837337-18837419,18837865-18837915,
           18838035-18838151,18838273-18838359
          Length = 1133

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +2

Query: 8   AQWHYTRLVVTLTNATMSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETY 166
           A+W   +     +  T + G   L   +ED+ K L+A  H   E +   MET+
Sbjct: 244 AEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296


>12_02_0935 + 24560432-24561852,24562543-24562628,24563265-24563332
          Length = 524

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 384 LVNAPGVKRPAIGVAPVWPANLSTARWPN 298
           + + P V R  +   P WPA+L   R+P+
Sbjct: 58  VADPPAVSRLYLHCPPQWPADLPEVRYPD 86


>02_02_0625 -
           12339623-12339707,12339938-12340062,12340844-12340996,
           12342037-12342102,12343374-12343443,12343523-12343593,
           12343664-12343795,12344042-12344130,12344189-12344270,
           12344743-12344811,12345641-12345730,12345856-12345918,
           12346158-12346217
          Length = 384

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 157 HLEINIFRSQMGGRRKHLSHIFLAER 80
           HL  ++   ++GG  +HL H+F + R
Sbjct: 47  HLRSDVGCGEIGGNNRHLDHLFDSSR 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,132,560
Number of Sequences: 37544
Number of extensions: 214232
Number of successful extensions: 484
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)