Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E07
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical pr...   143   4e-35
AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cel...    29   1.6  
AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.     29   1.6  
Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical pr...    28   2.1  
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr...    28   2.1  
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr...    27   6.4  

>Z37983-1|CAA86061.1|  276|Caenorhabditis elegans Hypothetical
           protein B0393.1 protein.
          Length = 276

 Score =  143 bits (347), Expect = 4e-35
 Identities = 66/113 (58%), Positives = 82/113 (72%)
 Frame = +2

Query: 56  MSGGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXX 235
           MSGG    AL+EEDV K+LA   HLG+ N+NFQM+ YVYKRR DG ++IN+++TWEK   
Sbjct: 1   MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLLL 60

Query: 236 XXXXXXXXEDPADVFVISSRAFGQRAVLKFAGHTGATPIAGRFTPGAFTNQIQ 394
                   E+PADV V+S+R + QRA+LKFA HTGAT I GRF+PG  TNQIQ
Sbjct: 61  AARAIAAVENPADVVVVSARPYAQRALLKFAAHTGATAIFGRFSPGCLTNQIQ 113


>AC024810-18|ABC71796.1|  787|Caenorhabditis elegans Abnormal cell
           migration protein 30 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 26  RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVI 202
           R+V T +         LL +S  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203


>AB212859-1|BAE66674.1|  787|Caenorhabditis elegans COGC-1 protein.
          Length = 787

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 26  RLVVTLTNATMSGGLDLLALSEED-VTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVI 202
           R+V T +         LL +S  D  T  LAA   L  ++++  +E Y+ KR    TH+I
Sbjct: 144 RIVATRSELEFQNCSTLLDISRSDWATNQLAAIALLQGKDISQLLELYLEKRFEHVTHLI 203


>Z35599-2|CAD91629.2|  584|Caenorhabditis elegans Hypothetical
           protein F25F2.1b protein.
          Length = 584

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 120 PPIWERKMLISRWRRTFINAVVTVRT 197
           PP + RK+L + WR  +++  VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125


>Z35599-1|CAA84659.2|  581|Caenorhabditis elegans Hypothetical
           protein F25F2.1a protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 120 PPIWERKMLISRWRRTFINAVVTVRT 197
           PP + RK+L + WR  +++  VT+ T
Sbjct: 100 PPNFARKVLEAEWREMYVDPKVTIET 125


>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
            M03A8.2 protein.
          Length = 2275

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 215  YAED*LRAYRHHGVYKRTSPSGN*HFPLPNGWSPQA 108
            +A+D    Y HH V ++ SPS N +     G+SP A
Sbjct: 1838 WADDHDLTYTHHDVVRQESPSFNCNISPIKGYSPPA 1873


>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical protein
            W02B8.2 protein.
          Length = 1256

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 272  QLDPPRRQQHEQRVQAFPMYAED*LRAYRHHGVY 171
            +L PPRR  +   V A  + A + L AY++HG++
Sbjct: 1115 KLMPPRRSDYP--VSAHAITANEILLAYQNHGIF 1146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,805,883
Number of Sequences: 27780
Number of extensions: 165677
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)