Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_E06
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    91   9e-20
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    31   0.058
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    26   2.2  
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    26   2.9  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   2.9  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   3.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   3.8  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   5.0  
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces...    25   6.7  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    24   8.8  
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    24   8.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    24   8.8  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 90.6 bits (215), Expect = 9e-20
 Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 1/128 (0%)
 Frame = +3

Query: 54  LKKAVKMLSRVAPGVCTQAVAVVN-HQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSA 230
           L++ +   SR+ P  C   V     H  +   ATLK I  RLKS+KNI+KIT+++K V+ 
Sbjct: 2   LRQTLTQASRMRP--CISVVGFRGFHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQ 59

Query: 231 AKYTRAERDLKAARPYGEGAVQFYERAEVVALEDDPKQLYVAMTSDRGLCGAVHTGVSKV 410
            K TRA+R ++A+  Y   + + ++ A   A E+  K L VA +SD+GLCG +H+ +S++
Sbjct: 60  TKLTRAQRAMEASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRL 118

Query: 411 IRNRLNEP 434
           IR  L++P
Sbjct: 119 IRRELHDP 126


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 31.5 bits (68), Expect = 0.058
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 60   KAVKMLSRVAPGVCTQAVAVVNHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKY 239
            K +  LS      C +AV  +     +N    KAI I  K VKNI   T ++++      
Sbjct: 1045 KRIYSLSADMVKACDEAVERLGADDTKNKQPRKAILIEFKGVKNINAETVTLRVKDLTHL 1104

Query: 240  TRAERDL 260
             RA + L
Sbjct: 1105 HRAYKGL 1111



 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 410 HLRDTGVDSTTQSSVRGHSDVE 345
           HL +T  D +T SSVRG+  V+
Sbjct: 241 HLHNTWEDYSTLSSVRGYKKVD 262


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 164 DGFKCGHIPVLLVVDHRHRLGAYTRCDTTQHFHGFFQ 54
           D F    + V    +  H +  +++CD TQ FH F Q
Sbjct: 254 DNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQ 290


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = -3

Query: 419 VADHLRDTGVDSTTQSSVRGHSDVELLRVILKGDYLSPFVE 297
           +A  LRD GVD    SS   H D    R+ +K  Y  PF E
Sbjct: 282 LAARLRDGGVDLIDVSSGGNHKD---QRIEVKDCYQVPFAE 319


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 136 FCWWLTTATAWVHTPGATRLNIFTAFFRRF*LKYTSRRNMSLAL 5
           FC +L   T W     A  +N  ++F R   L++      SL+L
Sbjct: 555 FCIFLAGVTEWAKGLDAAAINNSSSFLRHLFLRFDKSMTGSLSL 598


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 88  HRVYAPKRWRWSTTSRTGIWPHLKPSPFVSSL*RIF 195
           H+VY   R  W  T   G +P+LK +  V  L R+F
Sbjct: 281 HQVYP--RGNWVFTCLNGYYPYLKLTLLVGFLFRLF 314


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 177  KSVKNIQKITQSMKMVSAAKYTRAERDLK 263
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 157 LSVAIFLFCWWLTTATAWVHTP 92
           +S++I+ F +WLT   +W+  P
Sbjct: 115 VSLSIWRFLYWLTFVLSWIILP 136


>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 995

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 327 EDDPKQLYVAMTSDRGLCGAVHT--GVS 404
           + +P  L VA+ SDR  CG+++   GVS
Sbjct: 876 KQNPYDLLVALDSDRKACGSLYVDDGVS 903


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 200 LLNILYRLETNGDGFKCGHIPVLLVVDHRHRLG 102
           L N+    E +  G   GHIP L++ +   RLG
Sbjct: 176 LSNLQTAKEISNHGRSTGHIPELIINNFSTRLG 208


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 9/22 (40%), Positives = 19/22 (86%)
 Frame = +3

Query: 153 LKAISIRLKSVKNIQKITQSMK 218
           L+AIS+RL++++  +++ QSM+
Sbjct: 86  LQAISLRLQTMRTSEQMMQSMR 107


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 150 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 290
           T + IS RL   +NI+++ Q  + + +A +  A+R  K  +P  +GA
Sbjct: 549 TDQIISSRLVVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDLDGA 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,832,704
Number of Sequences: 5004
Number of extensions: 35962
Number of successful extensions: 92
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)