Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E06
(436 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 119 1e-27
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 119 1e-27
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 119 1e-27
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 29 1.9
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 29 1.9
AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical ... 28 3.4
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 27 7.8
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 27 7.8
AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen prot... 27 7.8
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 119 bits (286), Expect = 1e-27
Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
Frame = +3
Query: 123 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 302
N +Q R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F+
Sbjct: 18 NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77
Query: 303 ER----AEVVALEDDPKQLYVAMTSDRGLCGAVHTGVSKVIRNRLN 428
+ E V ++ KQ+ V +TSDRGLCG VH+ + K +N LN
Sbjct: 78 DNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILN 123
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 119 bits (286), Expect = 1e-27
Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
Frame = +3
Query: 123 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 302
N +Q R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F+
Sbjct: 18 NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77
Query: 303 ER----AEVVALEDDPKQLYVAMTSDRGLCGAVHTGVSKVIRNRLN 428
+ E V ++ KQ+ V +TSDRGLCG VH+ + K +N LN
Sbjct: 78 DNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILN 123
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 119 bits (286), Expect = 1e-27
Identities = 62/106 (58%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
Frame = +3
Query: 123 NHQQNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 302
N +Q R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F+
Sbjct: 18 NAEQARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFF 77
Query: 303 ER----AEVVALEDDPKQLYVAMTSDRGLCGAVHTGVSKVIRNRLN 428
+ E V ++ KQ+ V +TSDRGLCG VH+ + K +N LN
Sbjct: 78 DNIDPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILN 123
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 425 EPVADHLRDTGVDSTTQSSVRGHSDVEL 342
EP+A HL+ +G+D T SS D +L
Sbjct: 273 EPIATHLKSSGLDVTFVSSAMSQKDRQL 300
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 425 EPVADHLRDTGVDSTTQSSVRGHSDVEL 342
EP+A HL+ +G+D T SS D +L
Sbjct: 273 EPIATHLKSSGLDVTFVSSAMSQKDRQL 300
>AC006777-3|AAK72309.1| 345|Caenorhabditis elegans Hypothetical
protein Y46H3D.6 protein.
Length = 345
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 149 GHIPVLLVVDHRHRLGAYTRCDTTQHFHGFFQAFLIKIHQPTKYVAG 9
GHIP ++ H++ ++ +QHF FQ+ L I + K G
Sbjct: 120 GHIPKMIKYQEMHKMCSFDLQLVSQHFTSIFQS-LTPISEAQKVTLG 165
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 44 LKTPEKSRENVESCRTGCMHPSGGGGQPPAEQEYGHT*SHLHSSQVCKEYSEDHPV 211
++TP K ++ V + R M + GGG+ ++ S + V EYSE+HPV
Sbjct: 560 IQTPVKHQQRVAAMRE-AMRQAQGGGEVFYMRDVQDL-SGKDETLVMIEYSEEHPV 613
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 26.6 bits (56), Expect = 7.8
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 44 LKTPEKSRENVESCRTGCMHPSGGGGQPPAEQEYGHT*SHLHSSQVCKEYSEDHPV 211
++TP K ++ V + R M + GGG+ ++ S + V EYSE+HPV
Sbjct: 560 IQTPVKHQQRVAAMRE-AMRQAQGGGEVFYMRDVQDL-SGKDETLVMIEYSEEHPV 613
>AF003150-3|AAB54214.1| 208|Caenorhabditis elegans Collagen protein
55 protein.
Length = 208
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 71 NVESCRTGC-MHPSGGGGQPPAEQEYGH 151
N ES GC P G GQP A+ E GH
Sbjct: 94 NCESQSQGCPAGPPGPPGQPGAQGEQGH 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,468,340
Number of Sequences: 27780
Number of extensions: 220235
Number of successful extensions: 675
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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