Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E05
(401 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for ... 226 2e-59
BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein. 226 2e-59
BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11 p... 226 2e-59
BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11 p... 226 2e-59
BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11 p... 226 2e-59
BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein. 226 2e-59
BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11 p... 226 2e-59
BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11 p... 226 2e-59
AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11 p... 226 2e-59
AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11 p... 128 5e-30
U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase ... 34 0.20
BC107593-1|AAI07594.1| 503|Homo sapiens FMN1 protein protein. 29 5.8
BC103692-1|AAI03693.1| 503|Homo sapiens FMN1 protein protein. 29 5.8
AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens ... 29 5.8
BC110597-1|AAI10598.1| 411|Homo sapiens ligand-gated ion channe... 29 7.7
AF512521-1|AAO20969.1| 411|Homo sapiens ligand-gated ion channe... 29 7.7
AB223030-1|BAE19924.1| 411|Homo sapiens ligand-gated ion-channe... 29 7.7
>X06617-1|CAA29834.1| 158|Homo sapiens protein ( Human mRNA for
ribosomal protein S11. ).
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>BC100025-1|AAI00026.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>BC070224-1|AAH70224.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>BC016378-1|AAH16378.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>BC010028-1|AAH10028.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>BC007945-1|AAH07945.1| 158|Homo sapiens RPS11 protein protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>BC007603-1|AAH07603.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>BC007283-1|AAH07283.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>AB028893-2|BAA88215.1| 158|Homo sapiens ribosomal protein S11
protein.
Length = 158
Score = 226 bits (552), Expect = 2e-59
Identities = 105/134 (78%), Positives = 119/134 (88%), Gaps = 5/134 (3%)
Frame = +3
Query: 15 QTEKAFQKQATVFLNRKGGM-----KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTG 179
QTE+A+QKQ T+F N+K + K K R+ KN+GLGFKTP+EA+EGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 180 NVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGD 359
NVSIRGRIL+GVV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGD
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGD 124
Query: 360 IVTIGECRPLSKTV 401
IVT+GECRPLSKTV
Sbjct: 125 IVTVGECRPLSKTV 138
>AB007152-1|BAA25818.1| 83|Homo sapiens ribosomal protein S11
protein.
Length = 83
Score = 128 bits (310), Expect = 5e-30
Identities = 57/63 (90%), Positives = 61/63 (96%)
Frame = +3
Query: 213 VVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLS 392
VV KMKMQRTIVIRRDYLHY+ KYNRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLS
Sbjct: 1 VVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLS 60
Query: 393 KTV 401
KTV
Sbjct: 61 KTV 63
>U52144-1|AAC50455.1| 419|Homo sapiens isocitrate dehydrogenase
protein.
Length = 419
Score = 33.9 bits (74), Expect = 0.20
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = -1
Query: 398 CLGKRPALANCDDVSDFHV 342
CL +RPALA+CDDV+D V
Sbjct: 26 CLAQRPALAHCDDVTDLDV 44
>BC107593-1|AAI07594.1| 503|Homo sapiens FMN1 protein protein.
Length = 503
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 5 EGGSDRESVSETGDGVPQSQGGHEK 79
E G + + S++G GVPQ+QGG K
Sbjct: 370 EMGCNADQESQSGPGVPQTQGGEVK 394
>BC103692-1|AAI03693.1| 503|Homo sapiens FMN1 protein protein.
Length = 503
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 5 EGGSDRESVSETGDGVPQSQGGHEK 79
E G + + S++G GVPQ+QGG K
Sbjct: 370 EMGCNADQESQSGPGVPQTQGGEVK 394
>AK127078-1|BAC86815.1| 844|Homo sapiens protein ( Homo sapiens
cDNA FLJ45135 fis, clone BRAWH3038252, highly similar
to Formin 1 isoform IV. ).
Length = 844
Score = 29.1 bits (62), Expect = 5.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 5 EGGSDRESVSETGDGVPQSQGGHEK 79
E G + + S++G GVPQ+QGG K
Sbjct: 18 EMGCNADQESQSGPGVPQTQGGEVK 42
>BC110597-1|AAI10598.1| 411|Homo sapiens ligand-gated ion channel,
zinc activated 1 protein.
Length = 411
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 341 PEARR*MNRHVPVSLLKSVVFRQVMEII---APDNNCSLHFHFLNNACQDTASDGHVTRE 171
P+AR + HV ++L + E++ +NCSL F+ L+N + HV E
Sbjct: 134 PQARVDQDGHVKLNLALTTETNCNFELLHFPRDHSNCSLSFYALSNTAMELEFQAHVVNE 193
>AF512521-1|AAO20969.1| 411|Homo sapiens ligand-gated ion channel
subunit protein.
Length = 411
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 341 PEARR*MNRHVPVSLLKSVVFRQVMEII---APDNNCSLHFHFLNNACQDTASDGHVTRE 171
P+AR + HV ++L + E++ +NCSL F+ L+N + HV E
Sbjct: 134 PQARVDQDGHVKLNLALTTETNCNFELLHFPRDHSNCSLSFYALSNTAMELEFQAHVVNE 193
>AB223030-1|BAE19924.1| 411|Homo sapiens ligand-gated ion-channel
receptor L2 protein.
Length = 411
Score = 28.7 bits (61), Expect = 7.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 341 PEARR*MNRHVPVSLLKSVVFRQVMEII---APDNNCSLHFHFLNNACQDTASDGHVTRE 171
P+AR + HV ++L + E++ +NCSL F+ L+N + HV E
Sbjct: 134 PQARVDQDGHVKLNLALATETNCNFELLHFPRDHSNCSLSFYALSNTAMELEFQAHVVNE 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,067,388
Number of Sequences: 237096
Number of extensions: 1394061
Number of successful extensions: 2980
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2971
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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