Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_E04
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 211 7e-56
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 104 9e-24
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 99 2e-22
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 93 2e-20
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 89 6e-19
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 89 6e-19
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 82 7e-17
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 73 3e-14
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 36 0.006
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 29 0.39
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 27 2.1
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 8.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.4
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 211 bits (515), Expect = 7e-56
Identities = 102/184 (55%), Positives = 133/184 (72%)
Frame = +3
Query: 45 ISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 224
+SLLNPKAE + +QAL VNISAA G+QDV+K+NLGP GT KMLV GAG IK+TKDG VL
Sbjct: 2 LSLLNPKAESIQRAQALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVL 61
Query: 225 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGY 404
L EMQIQ+PTAS IA+ LL+GELLKQA++Y+ EGLHP +I++G+
Sbjct: 62 LTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGF 121
Query: 405 DIARNKALEILDSMKIPIEIKRENLLDIASTSLKTKVHASLATVLTDACVDAVLSIRSPG 584
++A+N+AL LDS K E+ RE LL++A TSL TK+ + + L A VDA+L+IR P
Sbjct: 122 NLAKNEALTFLDSFKTDFEVDREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRPD 181
Query: 585 KPVD 596
+P+D
Sbjct: 182 EPID 185
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 104 bits (250), Expect = 9e-24
Identities = 51/161 (31%), Positives = 87/161 (54%), Gaps = 1/161 (0%)
Frame = +3
Query: 102 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 281
NI AA+ + D ++T+LGPKG KM+ +G G++ +T DG +L + + HP A ++
Sbjct: 24 NIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSA 83
Query: 282 XXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGYDIARNKALEILDSMKIPIE 461
V+L G +L A+ + +G+HP +I E + A ++ + + IE
Sbjct: 84 AQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIE 143
Query: 462 IK-RENLLDIASTSLKTKVHASLATVLTDACVDAVLSIRSP 581
+ RE+LL A+TSL +K+ + + +L VDAVL + P
Sbjct: 144 LSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDP 184
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 99 bits (238), Expect = 2e-22
Identities = 53/164 (32%), Positives = 93/164 (56%), Gaps = 3/164 (1%)
Frame = +3
Query: 90 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 269
A+ +I A K + ++++T+LGP+G K+L+S G+I +T DG +L +M+++H A L+
Sbjct: 35 AVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLV 94
Query: 270 RXXXXXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGYDIARNKALEILDSMK 449
+ V+L G LL+QA+ + +G+HP I +GY+ A A++ LD++
Sbjct: 95 QLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAIS 154
Query: 450 IPIEIKRENLLDI---ASTSLKTKVHASLATVLTDACVDAVLSI 572
++ EN ++ A TSL +KV + + VDAVLS+
Sbjct: 155 DVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSV 198
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 93.5 bits (222), Expect = 2e-20
Identities = 46/161 (28%), Positives = 89/161 (55%), Gaps = 2/161 (1%)
Frame = +3
Query: 102 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 281
N+ A I +V+K++LGP G KMLV GD+ +T DG +L + ++HP ++
Sbjct: 26 NVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKVLVELAQ 85
Query: 282 XXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGYDIARNKALEIL-DSMKIPI 458
V++ ELL++A+ V +HP I GY +A +A++ + D + +
Sbjct: 86 QQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSV 145
Query: 459 E-IKRENLLDIASTSLKTKVHASLATVLTDACVDAVLSIRS 578
+ + +E+L+++A TS+ +K+ + + + VDA+LS+++
Sbjct: 146 DSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKT 186
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 88.6 bits (210), Expect = 6e-19
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 5/165 (3%)
Frame = +3
Query: 93 LAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR 272
L NI+A +QD ++T LGP G K++V G++ I+ DG ++ + I HP A +
Sbjct: 26 LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVD 85
Query: 273 XXXXXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGY----DIARNKALEILD 440
V+ GELL++A +V +G+ +I GY +A NK EI
Sbjct: 86 IARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAVNKIKEIAI 145
Query: 441 SMKIPIEIK-RENLLDIASTSLKTKVHASLATVLTDACVDAVLSI 572
+ + E K R+ L AST++ +K+ S +T T VDAVL++
Sbjct: 146 HLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTL 190
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 88.6 bits (210), Expect = 6e-19
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 1/179 (0%)
Frame = +3
Query: 45 ISLLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 224
+ ++N +A NI AAK + DV++T LGP+ +KML+ G + +T DG+ +
Sbjct: 5 VFVMNTNGNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAI 64
Query: 225 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGY 404
L E+++ HP A + ++L GE+L A + +HP ++ +
Sbjct: 65 LREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSF 124
Query: 405 DIARNKALEILDSMKIPIEI-KRENLLDIASTSLKTKVHASLATVLTDACVDAVLSIRS 578
A AL I+D + +P+ + + + T + TK+ A + ++ + AV ++ S
Sbjct: 125 KQALEDALSIIDEITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTVAS 183
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 81.8 bits (193), Expect = 7e-17
Identities = 52/181 (28%), Positives = 87/181 (48%), Gaps = 6/181 (3%)
Frame = +3
Query: 51 LLNPKAELARASQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA-GDIKITKDGNVLL 227
+ N R A + A + D++K+ LGPKG K+L S + GDI +T DG +L
Sbjct: 8 IFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATIL 67
Query: 228 HEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGYD 407
+ + + A ++ + ELL+QA+I V+ +HP++I +GY
Sbjct: 68 KSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYR 127
Query: 408 IARNKALEIL-----DSMKIPIEIKRENLLDIASTSLKTKVHASLATVLTDACVDAVLSI 572
IA A++ L D+ P + R +L +IA T+L +K+ + VDAVL +
Sbjct: 128 IATKTAIDALRASSIDNSSDPAKF-RSDLENIARTTLSSKILSQNKNHFAQLAVDAVLRL 186
Query: 573 R 575
+
Sbjct: 187 K 187
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 72.9 bits (171), Expect = 3e-14
Identities = 43/171 (25%), Positives = 84/171 (49%), Gaps = 5/171 (2%)
Frame = +3
Query: 90 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIA 269
A+ N +A + + ++ +T+LGP G K++V+ +T D ++ E+++ HP A L+
Sbjct: 27 AVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQQTFLTNDAATIIRELEVIHPAAKLVV 86
Query: 270 RXXXXXXXXXXXXXXXXVLLIGELLKQADIYVSEGLHPRIITEGYDIARNKALEILDSM- 446
V+ GELL +A+ + GL P I +GY++A + +E+L+ +
Sbjct: 87 DATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHTMEVLEEIC 146
Query: 447 --KIPIEIKRENLLDIASTSLKTKVHASLATVLTDACVDAVLSI--RSPGK 587
KI + L+ T + +K + + L+D A+L++ + P K
Sbjct: 147 ADKIETVESEKELIKAIRTCISSKQYGN-EDFLSDLVAKAILTVLPKDPSK 196
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 35.5 bits (78), Expect = 0.006
Identities = 32/153 (20%), Positives = 59/153 (38%), Gaps = 6/153 (3%)
Frame = +3
Query: 135 MKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIAR----XXXXXXXXXX 302
+ LGPKG ++ G KITKDG + + ++ +L AR
Sbjct: 58 VSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAG 117
Query: 303 XXXXXXVLLIGELLKQADIYVSEGLHPRIITEGYDIARNKALEILDSMKIPIEIKRENLL 482
+L + + V+ G +P + G +A + +E L + K I E +
Sbjct: 118 DGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTS-EEIS 176
Query: 483 DIASTSLKTKVHAS--LATVLTDACVDAVLSIR 575
+A+ S H LA + + V++++
Sbjct: 177 QVATISANGDTHIGELLAKAMERVGKEGVITVK 209
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 29.5 bits (63), Expect = 0.39
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +2
Query: 215 QRTSP*DADSTSDCFS--NRACFDCTR*CYRRWYH 313
++TSP + D SD ++ CF C C + WYH
Sbjct: 172 EQTSPKEEDEKSDKVPRVDKVCFTCGVNCSQTWYH 206
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Frame = +3
Query: 324 LLIGELLKQADIYVSEGLHPRIITEGYDIARNKALEILDSMKIPIEIKRENLLDIASTSL 503
L+ G+ LK+ D+ +T+ ++A + ALE+ +S+K + K+ D ++
Sbjct: 250 LIGGKYLKEEDLSPILKQMQEHLTKK-NVANSIALELCESVKASLINKKVGSFDTVKNTV 308
Query: 504 KTKVHASLATVLT-DACVDAVLSIRSPGK 587
L +LT +D + SIRS K
Sbjct: 309 NKAFRDRLTQILTPSTSLDLLHSIRSVRK 337
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/54 (22%), Positives = 27/54 (50%)
Frame = +3
Query: 390 ITEGYDIARNKALEILDSMKIPIEIKRENLLDIASTSLKTKVHASLATVLTDAC 551
I++ R L+ ++ +K+ +E + +LLD + L ++ ++ DAC
Sbjct: 466 ISKSVQSFRGTRLKKIEYLKVLLEDHKYHLLDFHALPLPLDPSVNIVGIIPDAC 519
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 336 HQ*ATQLKWYHRL*HHLVQSKHARL 262
H ATQ+KW ++ H++ S H RL
Sbjct: 366 HNGATQVKWNYKN-PHILASSHGRL 389
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,148
Number of Sequences: 5004
Number of extensions: 39524
Number of successful extensions: 110
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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