Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D24
(624 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 214 5e-56
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 111 4e-25
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 111 4e-25
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 101 3e-22
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 93 1e-19
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 90 1e-18
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 90 1e-18
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 87 1e-17
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 86 2e-17
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 83 1e-16
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 81 6e-16
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 75 4e-14
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 68 5e-12
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 68 5e-12
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 66 1e-11
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 65 3e-11
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 65 4e-11
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 61 5e-10
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 58 4e-09
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 57 1e-08
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 56 2e-08
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 46 3e-05
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 39 0.003
Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical pr... 37 0.010
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 37 0.013
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 32 0.38
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 32 0.38
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 32 0.38
AF003740-1|AAM15561.2| 488|Caenorhabditis elegans Hypothetical ... 31 0.88
Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical pr... 29 2.7
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 2.7
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 2.7
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical... 29 3.6
Z83220-3|CAB05702.1| 493|Caenorhabditis elegans Hypothetical pr... 28 4.7
Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin con... 28 6.2
AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding c... 28 6.2
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 214 bits (522), Expect = 5e-56
Identities = 84/138 (60%), Positives = 119/138 (86%)
Frame = +1
Query: 130 MAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAE 309
M+ATRRLQKEL D++ G+K++ +++ +E+N+L W L++PD PYNKGAF++ I FP +
Sbjct: 1 MSATRRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLIPDKEPYNKGAFKVGITFPVD 60
Query: 310 YPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHP 489
YPFKPPK++F+TKIYHPN+DE+G+ CLPI++AENWKPATKT+QV+ AL++L+N+PEP HP
Sbjct: 61 YPFKPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEPSHP 120
Query: 490 LRAELAEEFLKDRKKLLK 543
+RA++AEEF KD KK +K
Sbjct: 121 IRADVAEEFQKDHKKFMK 138
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 486 PIAC*TR*RISKGPEEITKNAEEFTKKHSEKRP 584
PI K ++ K AEE T+KH+EKRP
Sbjct: 120 PIRADVAEEFQKDHKKFMKTAEEHTRKHAEKRP 152
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 111 bits (267), Expect = 4e-25
Identities = 52/134 (38%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Frame = +1
Query: 136 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 312
A +R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +Y
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 313 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 492
PFKPPK++F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 493 RAELAEEFLKDRKK 534
E+A + DR++
Sbjct: 120 VPEIARIYKTDRER 133
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 111 bits (267), Expect = 4e-25
Identities = 52/134 (38%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Frame = +1
Query: 136 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 312
A +R+QKEL D+ + V + ++ WQ I+ P PY G F + I+FP +Y
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGD-DLFHWQATIMGPPESPYQGGVFFLTIHFPTDY 60
Query: 313 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 492
PFKPPK++F T+IYHPNI+ G +CL I+ ++ W PA +V+ ++ +L+ DP P+ PL
Sbjct: 61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQ-WSPALTISKVLLSICSLLCDPNPDDPL 119
Query: 493 RAELAEEFLKDRKK 534
E+A + DR++
Sbjct: 120 VPEIARIYKTDRER 133
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 101 bits (243), Expect = 3e-22
Identities = 47/120 (39%), Positives = 73/120 (60%), Gaps = 1/120 (0%)
Frame = +1
Query: 211 DESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVC 387
DESN + +I PD+ P+ G F++E+ P EYP PK+ F TKIYHPNID+ G++C
Sbjct: 29 DESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAPKVRFMTKIYHPNIDKLGRIC 88
Query: 388 LPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKLLKMQKNLPKN 567
L I+ + W PA + V+ ++ AL++ P PE PL ++AE++ + + +K K N
Sbjct: 89 LDILK-DKWSPALQIRTVLLSIQALLSAPNPEDPLATDVAEQWKTNEAEAIKTAKQWTMN 147
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 93.1 bits (221), Expect = 1e-19
Identities = 42/141 (29%), Positives = 78/141 (55%), Gaps = 1/141 (0%)
Frame = +1
Query: 145 RLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP 324
R++KE+ D+ ++ + +D + E +Q I+ D Y F + ++ EYPFKP
Sbjct: 17 RIRKEIADLAKNKRRFIKDFRKIEKCKDIFQFKIIGDGVLYKNMIFTLTLDVNVEYPFKP 76
Query: 325 PKISFKTKIYHPNIDE-KGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPLRAE 501
P + F +YHPN+D ++C P++ ENWKP T + V+ L+ L+N+P+ P+ +
Sbjct: 77 PYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPDLSRPVNID 136
Query: 502 LAEEFLKDRKKLLKMQKNLPK 564
A +++ ++ + +K L K
Sbjct: 137 AAHDYIHNKVEFVKKSTELAK 157
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 89.8 bits (213), Expect = 1e-18
Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Frame = +1
Query: 127 TMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFP 303
T + RRL ++ +++ E NILTW+ +I P P+ G F++ + F
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 304 AEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 483
EYP KPP + F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPN 119
Query: 484 HPLRAELAEEFLKDRKKLLK 543
P + A+ + ++R++ K
Sbjct: 120 SPANSLAAQLYQENRREYEK 139
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 89.8 bits (213), Expect = 1e-18
Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Frame = +1
Query: 127 TMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFP 303
T + RRL ++ +++ E NILTW+ +I P P+ G F++ + F
Sbjct: 2 TTPSRRRLMRDFKKLQEDPPAGVSGAPT-EDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 304 AEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 483
EYP KPP + F +K++HPN+ G +CL I+ W P ++ ++ +L+++P P
Sbjct: 61 EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ-NRWSPTYDVAAILTSIQSLLDEPNPN 119
Query: 484 HPLRAELAEEFLKDRKKLLK 543
P + A+ + ++R++ K
Sbjct: 120 SPANSLAAQLYQENRREYEK 139
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 86.6 bits (205), Expect = 1e-17
Identities = 42/134 (31%), Positives = 77/134 (57%), Gaps = 13/134 (9%)
Frame = +1
Query: 148 LQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEYPFKP 324
L+K+L D+R+ + F VD+++I W+ L++ P + Y G F+ ++FP +YP KP
Sbjct: 8 LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 325 PKISFKTKIYHPNIDEKGQVCLPII------------SAENWKPATKTDQVIQALVALVN 468
PK+ F ++I+HPNID++G VC+ I+ E W P + ++ ++++++
Sbjct: 68 PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLT 127
Query: 469 DPEPEHPLRAELAE 510
DP E P + A+
Sbjct: 128 DPNFESPANVDAAK 141
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 85.8 bits (203), Expect = 2e-17
Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 13/150 (8%)
Frame = +1
Query: 112 TKYFCTMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQ-GLIVPDNPPYNKGAFRI 288
+K + A R L EL +++ ++ F I V+E N+ W G+ P Y G F+
Sbjct: 3 SKASTSSGALRALTMELKNLQSQPVEGFT-IDVNEDNLFVWTVGIYGPPKTLYQGGYFKA 61
Query: 289 EINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI------------ISAENWKPATKT 432
I FP+ YP+ PP + F TK++HPN+ E G +C+ I ++ E W P
Sbjct: 62 SIRFPSNYPYSPPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSV 121
Query: 433 DQVIQALVALVNDPEPEHPLRAELAEEFLK 522
++ ++++L+N+P P + + + K
Sbjct: 122 RTILLSVISLLNEPNTSSPANVDASVMYRK 151
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 83.4 bits (197), Expect = 1e-16
Identities = 44/154 (28%), Positives = 74/154 (48%), Gaps = 13/154 (8%)
Frame = +1
Query: 136 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 312
A +RL E ++ + +DE N W+ LI P+ + G F I FP +Y
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 313 PFKPPKISFKTKIYHPNIDEKGQVCLPIISA------------ENWKPATKTDQVIQALV 456
P PPK+ F I+HPNI G+VC+ I+ A E W P ++++ ++V
Sbjct: 65 PLSPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVV 124
Query: 457 ALVNDPEPEHPLRAELAEEFLKDRKKLLKMQKNL 558
+++ +P E P A+ + +DR + K+ +L
Sbjct: 125 SMLAEPNDESPANVSAAKMWREDRAQFEKIADSL 158
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 81.0 bits (191), Expect = 6e-16
Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Frame = +1
Query: 136 ATRRLQKELNDIRQSGLKSFRDIQVD--ESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 306
A RLQ+E ++ + S I ++ N+ +G I P + PY G F ++I P
Sbjct: 5 AFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPD 64
Query: 307 EYPFKPPKISFKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPE 483
+YPF PP + F TKI+HPN+ + G +CL I+ + W + V+ ++ AL+ PEP+
Sbjct: 65 QYPFSPPNVKFSTKIWHPNVSSQTGVICLDILK-DQWAASLTLRTVLLSIQALMCTPEPK 123
Query: 484 HPLRAELAEEFLK 522
P A +A+++++
Sbjct: 124 DPQDAVVAKQYME 136
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 74.9 bits (176), Expect = 4e-14
Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 19/148 (12%)
Frame = +1
Query: 139 TRRLQKELN--DIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAE 309
TR+ ++ N DI ++G+ +++ E+N++ +G I P+ PY G F I+++ P
Sbjct: 24 TRKCKEVANASDITEAGIH----VEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEH 79
Query: 310 YPFKPPKIS---------------FKTKIYHPNI-DEKGQVCLPIISAENWKPATKTDQV 441
YPF+PPK++ F T+I+HPNI + G +CL I+ + W + V
Sbjct: 80 YPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILK-DKWTASLTLRTV 138
Query: 442 IQALVALVNDPEPEHPLRAELAEEFLKD 525
+ +L A++ PEP P A +A++F+ +
Sbjct: 139 LLSLQAMLCSPEPSDPQDAVVAKQFINN 166
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 68.1 bits (159), Expect = 5e-12
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = +1
Query: 220 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 396
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 397 ISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKLLKMQKNLPKNIV 573
+ ++WKP+ Q++ + L+N P E P +AE + + ++R + +K + K V
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNR---AEYEKRVKKEAV 153
Query: 574 K 576
K
Sbjct: 154 K 154
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 68.1 bits (159), Expect = 5e-12
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Frame = +1
Query: 220 NILTWQGLIVPDNPP-YNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI 396
N+ W+ I + G +RI + F ++P PPK F+ ++HPN+ G VCL +
Sbjct: 37 NLFNWECAIPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSL 96
Query: 397 ISA-ENWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRKKLLKMQKNLPKNIV 573
+ ++WKP+ Q++ + L+N P E P +AE + + ++R + +K + K V
Sbjct: 97 LDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNR---AEYEKRVKKEAV 153
Query: 574 K 576
K
Sbjct: 154 K 154
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 66.5 bits (155), Expect = 1e-11
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +1
Query: 250 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAENWKPAT 426
P + Y G +RI ++ P +YPFK P I F KI+HPNIDE G VCL +I+ + W
Sbjct: 42 PKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVIN-QAWTALY 100
Query: 427 KTDQVIQA-LVALVNDPEPEHPLRAELAEEFL 519
+ L L+ P PL E A ++
Sbjct: 101 DLTNIFDTFLPQLLTYPNAADPLNGEAARLYI 132
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 65.3 bits (152), Expect = 3e-11
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Frame = +1
Query: 244 IVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAEN---- 411
+ P Y G FR +I P EY PP + TK++HPNI+E G +CL I+ +
Sbjct: 65 VTPQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGSICLSILRQNSLDQY 124
Query: 412 -WKPATKTDQVIQALVALVND 471
W+P V+ LV+L ND
Sbjct: 125 GWRPTRNLTDVVHGLVSLFND 145
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Frame = +1
Query: 133 AATRRLQKELNDIRQSGLKSFRDIQVDESNILT-WQ-GLIVPDNPPYNKGAFRIEINFPA 306
AATRRL KEL ++ + SN L W+ G++ + Y F ++ F
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 307 EYPFKPPKISF--KTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALV-NDPE 477
+YPF P++ F +T HP+I G +CL I+S ++W PA V ++++++ + E
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILS-DDWTPALSVQSVCLSILSMLSSSKE 122
Query: 478 PEHPL 492
+HP+
Sbjct: 123 KKHPI 127
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 61.3 bits (142), Expect = 5e-10
Identities = 41/122 (33%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Frame = +1
Query: 139 TRRLQKELNDIRQS-GLKSFRDIQV--DESNILTWQGLIV-PDNPPYNKGAFRIEINFPA 306
T+R+ KEL I + L + I V DE + + LI PD+ PY G F +I FP
Sbjct: 411 TKRIAKELASIANALPLNASNSIYVCYDEGRVDIIKVLISGPDDTPYANGLFEFDIFFPT 470
Query: 307 EYPFKPPKISFKTK-----IYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVND 471
YPF PPK +F T ++PN+ G++CL I+ +P K + + LV+
Sbjct: 471 GYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSILGTWEGRPEEKWNPYCSLMQVLVSI 530
Query: 472 PE 477
E
Sbjct: 531 QE 532
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 58.4 bits (135), Expect = 4e-09
Identities = 25/94 (26%), Positives = 48/94 (51%)
Frame = +1
Query: 250 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATK 429
P P+ G + + +NF ++P PP FKT ++HPN+D +G + L ++ E+W T
Sbjct: 78 PRGSPWEGGEYEVSVNFH-KWPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETS 136
Query: 430 TDQVIQALVALVNDPEPEHPLRAELAEEFLKDRK 531
++++ + L+ P+ E E+ R+
Sbjct: 137 LKKLLREISNLLATPDLTQAANIEAWMEYENQRE 170
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 56.8 bits (131), Expect = 1e-08
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Frame = +1
Query: 136 ATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIV-PDNPPYNKGAFRIEINFPAEY 312
A +RL+K+ + + + + + E+NIL W+ +I+ PY G + ++ FP ++
Sbjct: 9 ALQRLKKDYQRLLKEPVPFMKAAPL-ETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDF 67
Query: 313 PFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALVNDPEPEH 486
PFKPP I T + ++CL I + W PA +I L++ +ND +P
Sbjct: 68 PFKPPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP-- 123
Query: 487 PLRAELAEEFLKDRKKLLKMQK 552
L + + E +RK L K K
Sbjct: 124 TLGSLVTSE--SERKLLAKKSK 143
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 56.4 bits (130), Expect = 2e-08
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +1
Query: 235 QGLIVP-DNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDE-KGQVCLPIISAE 408
QG+I + PY G F ++I YPFK P + F TKI+HP++ G +CL +
Sbjct: 382 QGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNG 441
Query: 409 NWKPATKTDQVIQALVALVNDPEPEHPLRAELAEEFLKDRK 531
W + +V+ + + +++ + P+ E+ E+ +R+
Sbjct: 442 VWPVSMTIYKVLIVIQSWMSNFNEKEPIDVEILEQATNNRE 482
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 45.6 bits (103), Expect = 3e-05
Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = +1
Query: 115 KYFCTMAATRRLQKELNDIRQSGLKSFRDIQVDESNILTWQGLIVPD-NPPYNKGAFRIE 291
+Y A RRL KE ++RQ Q E N+ W I + G +
Sbjct: 4 QYNTKNAGVRRLMKEAMELRQP--TEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGR 61
Query: 292 INFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPI--ISAENWKPATKTDQVIQALVALV 465
I FPA+YP KPP + T +++K VCL I E W P+ + AL+ +
Sbjct: 62 IIFPADYPMKPPNLILLTPNGRFELNKK--VCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 250 PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNID-EKGQV 384
P + PY G F +++ FP YP P+I F+T I++ ++ GQV
Sbjct: 38 PADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCAVEPSTGQV 83
>Z98877-7|CAB63403.1| 292|Caenorhabditis elegans Hypothetical
protein Y69H2.6 protein.
Length = 292
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +1
Query: 217 SNILTWQGLIVPDNPPYNKGAFRIEINFPAEYPFKP--PKISF-KTKIYHPNIDEKG-QV 384
+N W G+I + G FR I+ P E+P P++ F ++ ++HP I K ++
Sbjct: 46 NNKFLWFGVIFVRKGIFGGGIFRFNIHIPLEFPDASDLPRVIFEQSNLFHPLICTKSKEL 105
Query: 385 CLPIISAENWK 417
CL E WK
Sbjct: 106 CLNRSFPEGWK 116
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Frame = +1
Query: 202 IQVDESNILT-WQGLIV-PDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK 375
++ D LT W I+ P PY + ++I YP +PP + F TK++ +++
Sbjct: 30 LEDDSDMTLTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRFTTKVHMVGVNQS 89
Query: 376 GQVC--LPIISAENWKPATKTDQVIQ 447
V + + NW + V++
Sbjct: 90 NGVIDKRNLTTLRNWSNSYMIKTVLE 115
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.9 bits (69), Expect = 0.38
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 202 IQVDESNILTWQGLIV-PDNPPYNKGAFRIEINF-PAEYPFKPPKISFKTKIYHPNIDEK 375
+++DE+ L + +I P Y G F +IN P + P++ F T I+HPN+ +
Sbjct: 54 MRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIPRVCFHTFIFHPNLGKY 113
Query: 376 G 378
G
Sbjct: 114 G 114
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 259 PPYNKGAFRIEINFPAEYPFKPPKISFK 342
P YNKG + ++++ PA Y F+P I K
Sbjct: 67 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 94
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 259 PPYNKGAFRIEINFPAEYPFKPPKISFK 342
P YNKG + ++++ PA Y F+P I K
Sbjct: 65 PVYNKGHYTLKVSAPAGYYFEPDSIEIK 92
>AF003740-1|AAM15561.2| 488|Caenorhabditis elegans Hypothetical
protein C41D11.3 protein.
Length = 488
Score = 30.7 bits (66), Expect = 0.88
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 88 PLKLIE*ITKYFCTMAATRRLQKELNDIRQS 180
P+KL E TKY T TRR + L+DIR+S
Sbjct: 402 PIKLEESPTKYPVTPVYTRRSRSSLSDIRES 432
>Z79754-7|CAB02096.2| 387|Caenorhabditis elegans Hypothetical
protein F25H2.8 protein.
Length = 387
Score = 29.5 bits (63), Expect = 2.0
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Frame = +1
Query: 127 TMAATRRLQKELNDIRQS-----GLKSFRDIQVDESNILTWQGL--IVPDNP-------- 261
++ AT RL KE+ DI +S G+ +F +++ +E+ W L + D+P
Sbjct: 212 SITATDRLMKEIRDIHRSEHFKNGIYTF-ELEKEENLYQWWIKLHKVDEDSPLFEDMKKL 270
Query: 262 --PYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK-----GQVCLPIISAENWKP 420
+N+ F ++P PP + ++ P+I++ G +C+ +++ + W
Sbjct: 271 KKDHNQDHLLFSFTFNEKFPCDPPFV----RVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 421 ATKTDQVIQALVA 459
A + I + A
Sbjct: 327 AYSIESCILQIAA 339
>Z81473-5|CAB03893.2| 139|Caenorhabditis elegans Hypothetical
protein C17D12.5 protein.
Length = 139
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 259 PPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPAT 426
PPY + + + + P ++PF PP I+ KT +K L + WKP+T
Sbjct: 46 PPYTE--YIVTVAIPPKFPFSPPAITCKT--------DKNMKFL-FLEENQWKPST 90
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +1
Query: 313 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 492
PF+PP + P +D G V P+ + E A + N P P+
Sbjct: 266 PFRPPMPMLSPHLMSPPLDRDGGVTSPVSNGEPINTAI-------PFAPIYNPPTAPRPV 318
Query: 493 RAELAEEFLKDRKKLLKMQKNLPKN 567
+ +E+++ + + ++NL K+
Sbjct: 319 TDDTLKEYVRKQIEYYFSEENLQKD 343
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +1
Query: 313 PFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPATKTDQVIQALVALVNDPEPEHPL 492
PF+PP + P +D G V P+ + E A + N P P+
Sbjct: 463 PFRPPMPMLSPHLMSPPLDRDGGVTSPVSNGEPINTAI-------PFAPIYNPPTAPRPV 515
Query: 493 RAELAEEFLKDRKKLLKMQKNLPKN 567
+ +E+++ + + ++NL K+
Sbjct: 516 TDDTLKEYVRKQIEYYFSEENLQKD 540
>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
protein F15E6.1 protein.
Length = 1655
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Frame = +1
Query: 244 IVPDNPPYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEKGQVCLPIISAENWKPA 423
+ ++PP A + P P PPK+ K H E+ ++ + KP
Sbjct: 547 LTEEDPPEESAAAAAPEDVPDAAPEDPPKVILKPTPPHRMTQEEKNAHFARLTTDKEKPT 606
Query: 424 TKTDQVIQ-ALVALVNDPEPEHPLRAELAEEFL 519
+ T + Q A V P P LR +E L
Sbjct: 607 SSTSILPQDAAPPHVPPPPPPLVLRPHHQDETL 639
>Z83220-3|CAB05702.1| 493|Caenorhabditis elegans Hypothetical
protein C34B7.3 protein.
Length = 493
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 448 ALVALVNDPEPEHPLRAELAEEFLKDRKKLLKMQKNLP 561
A + LVN+PE + + EL ++R+ ++ QK+LP
Sbjct: 313 AFLYLVNNPETQKRIHEELDRNVGRERQVVMDDQKHLP 350
>Z29117-5|CAC42271.1| 1704|Caenorhabditis elegans Hypothetical protein
C48B4.4c protein.
Length = 1704
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = -1
Query: 384 HLTFFINVWVIDFCFETNFRRLERIFCWEVNLNTESTLIIWWIVWNN*SLPS*YIRLINL 205
HL I W + F F F ++ LIIW +V + +L + ++ +
Sbjct: 1199 HLAIVILFWFLYFFSSVPFIYAVS-FLFQSPSKANVLLIIWQVVISGAALLAVFLIFMIF 1257
Query: 204 NISK*LQSRLSDVIQFLL 151
NI + L+S L ++ FLL
Sbjct: 1258 NIDEWLKSILVNIFMFLL 1275
>Z29117-4|CAA82384.2| 1691|Caenorhabditis elegans Hypothetical protein
C48B4.4b protein.
Length = 1691
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = -1
Query: 384 HLTFFINVWVIDFCFETNFRRLERIFCWEVNLNTESTLIIWWIVWNN*SLPS*YIRLINL 205
HL I W + F F F ++ LIIW +V + +L + ++ +
Sbjct: 1186 HLAIVILFWFLYFFSSVPFIYAVS-FLFQSPSKANVLLIIWQVVISGAALLAVFLIFMIF 1244
Query: 204 NISK*LQSRLSDVIQFLL 151
NI + L+S L ++ FLL
Sbjct: 1245 NIDEWLKSILVNIFMFLL 1262
>Z29117-3|CAA82383.2| 1689|Caenorhabditis elegans Hypothetical protein
C48B4.4a protein.
Length = 1689
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = -1
Query: 384 HLTFFINVWVIDFCFETNFRRLERIFCWEVNLNTESTLIIWWIVWNN*SLPS*YIRLINL 205
HL I W + F F F ++ LIIW +V + +L + ++ +
Sbjct: 1184 HLAIVILFWFLYFFSSVPFIYAVS-FLFQSPSKANVLLIIWQVVISGAALLAVFLIFMIF 1242
Query: 204 NISK*LQSRLSDVIQFLL 151
NI + L+S L ++ FLL
Sbjct: 1243 NIDEWLKSILVNIFMFLL 1260
>AF537093-1|AAO85552.1| 387|Caenorhabditis elegans ubiquitin
conjugating enzyme UBC-25 protein.
Length = 387
Score = 27.9 bits (59), Expect = 6.2
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 22/133 (16%)
Frame = +1
Query: 127 TMAATRRLQKELNDIRQS-----GLKSFRDIQVDESNILTWQGL--IVPDNP-------- 261
++ A+ RL KE+ DI +S G+ +F +++ +E+ W L + D+P
Sbjct: 212 SITASDRLMKEIRDIHRSEHFKNGIYTF-ELEKEENLYQWWIKLHKVDEDSPLFEDMKKL 270
Query: 262 --PYNKGAFRIEINFPAEYPFKPPKISFKTKIYHPNIDEK-----GQVCLPIISAENWKP 420
+N+ F ++P PP + ++ P+I++ G +C+ +++ + W
Sbjct: 271 KKDHNQDHLLFSFTFNEKFPCDPPFV----RVVAPHINQGFVLGGGAICMELLTKQGWSS 326
Query: 421 ATKTDQVIQALVA 459
A + I + A
Sbjct: 327 AYSIESCILQIAA 339
>AF049142-1|AAC24116.1| 1704|Caenorhabditis elegans ATP-binding
cassette transporter protein.
Length = 1704
Score = 27.9 bits (59), Expect = 6.2
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = -1
Query: 384 HLTFFINVWVIDFCFETNFRRLERIFCWEVNLNTESTLIIWWIVWNN*SLPS*YIRLINL 205
HL I W + F F F ++ LIIW +V + +L + ++ +
Sbjct: 1199 HLAIVILFWFLYFFSSVPFIYAVS-FLFQSPSKANVLLIIWQVVISGAALLAVFLIFMIF 1257
Query: 204 NISK*LQSRLSDVIQFLL 151
NI + L+S L ++ FLL
Sbjct: 1258 NIDEWLKSILVNIFMFLL 1275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,901
Number of Sequences: 27780
Number of extensions: 235219
Number of successful extensions: 705
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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