Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D23
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 93 2e-20
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 0.76
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 0.76
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 1.0
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 27 1.0
SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex sub... 27 1.8
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|... 26 3.1
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 26 3.1
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 5.4
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 5.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 7.1
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 25 7.1
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|... 25 7.1
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 24 9.4
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 93.1 bits (221), Expect = 2e-20
Identities = 52/100 (52%), Positives = 63/100 (63%), Gaps = 1/100 (1%)
Frame = +3
Query: 153 SQLQHMCGLDIDSKASYV-RLSGIICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEY 329
S Q + GL+ + V R + IICTIGP S +V L K+ + GMN+ RMNFSHGS+EY
Sbjct: 7 SPKQWVAGLNSELDIPAVNRRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEY 66
Query: 330 HAETIRNCREAEKNYSAKLGTPFSLAIALDTKGPEIRTGL 449
H I N R+A + F LAIALDTKGPEIRTGL
Sbjct: 67 HQSVIDNARKA-----SATNPLFPLAIALDTKGPEIRTGL 101
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 0.76
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 344 DGFGMVLMGTMGEVHSSYVHARFHH--LFQHGHITRGGSNSTDDARE 210
DG ++ T +V Y+H R H LF H H+T + +D+ R+
Sbjct: 1415 DGRAIIFCRTKKDVE--YIHRRLHQSDLFAHTHVTIYTGDVSDEERQ 1459
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 0.76
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 344 DGFGMVLMGTMGEVHSSYVHARFHH--LFQHGHITRGGSNSTDDARE 210
DG ++ T +V Y+H R H LF H H+T + +D+ R+
Sbjct: 1415 DGRAIIFCRTKKDVE--YIHRRLHQSDLFAHTHVTIYTGDVSDEERQ 1459
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 1.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 106 PVNAISYSSLVTIKNSNLNKALSLPTLLYSLTALV 2
P++AIS ++L+ +S+L K PTLL +L LV
Sbjct: 361 PISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 27.5 bits (58), Expect = 1.0
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 319 PMSTMPKPSGIVARLRKTIA-RNLAHLSPWPSLWTLRARRSGQV 447
P + + +P+G + + + ++L+HL P PS W +R S +V
Sbjct: 337 PRNPLVRPNGGSSTVGSLMQPQSLSHLGPLPSGWEMRLTNSARV 380
>SPAC22A12.05 |rpc11||DNA-directed RNA polymerase III complex
subunit Rpc11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -3
Query: 312 GRSSFELRSCP--FPSSFPAWSHHE 244
GR++F+ R+CP FP S +S HE
Sbjct: 19 GRNAFDCRTCPYHFPISTFLYSRHE 43
>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -2
Query: 361 ASRQFLMVSAWYSWEPWEKFIRAT 290
AS + +S WY +E W K ++ T
Sbjct: 145 ASCLMIFISLWYFYETWIKAVKVT 168
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 304 TSPMVPMSTMPKPSGIVARLRKTIARNLAHLSPWPSLWTLRAR 432
T+P P M KP+ TI + LSP+ + WT+RAR
Sbjct: 158 TAP-APPPMMKKPAA--PNSLSTIIYPIEGLSPYQNKWTIRAR 197
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +3
Query: 180 DIDSKASYVRLSGIICTIG 236
D+D+K +Y++LS T+G
Sbjct: 36 DVDTKENYIKLSNTFSTLG 54
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 354 DNS*WFRHGTHGNHGRSSFELRSCPFPS 271
+NS F+ ++GN R SFEL PS
Sbjct: 664 NNSRQFKRPSYGNMSRPSFELNGSRNPS 691
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/65 (20%), Positives = 29/65 (44%)
Frame = +3
Query: 231 IGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKNYSAKLGTPFSLAI 410
I P ++ + ++++ V R+N +H S ++ + +Y +LG S I
Sbjct: 1194 ISPEAKTLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISYHLRLGKSKSKKI 1253
Query: 411 ALDTK 425
++ K
Sbjct: 1254 GIEIK 1258
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 303 NFSHGSHEYHAETIRNCREAEKNYSAKLGTPFSLAIALDTKGPEIRTG 446
+F +G +AE RNC + K+ SA SL+ +RTG
Sbjct: 323 SFVNGLKSSNAEVRRNCFQTFKDLSANASDNESLSRVASELITSLRTG 370
>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
3|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 7.1
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = -2
Query: 346 LMVSAWYSWEPWEKFIRAT 290
+ +S WY +E W K ++ T
Sbjct: 150 IFISLWYFYETWIKAVKVT 168
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 9.4
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +3
Query: 111 ADKPGQQLAAANVGSQLQHMCGLDIDSKASYVRLSGIICTIGPASRDVTMLEKMMETGMN 290
AD LAAA+ LQ + +D + S L+ TIG ++ + +L +E
Sbjct: 113 ADIRVNMLAAASQLPGLQLNNAVSLDDQDSVFNLATRYLTIGDWNQAIELLSSSLE---- 168
Query: 291 VARMNFSHGSHEYHAETIRNCR 356
++ S + E H I CR
Sbjct: 169 --KLENSDSNSEDHKSQINLCR 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,567
Number of Sequences: 5004
Number of extensions: 42193
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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