Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D23
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908 98 2e-21
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969... 75 3e-14
10_08_0999 + 22121029-22121235,22121819-22122082,22122123-221223... 69 1e-12
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 61 3e-10
12_01_0297 - 2244793-2244945,2245337-2245396,2245529-2245628,224... 60 1e-09
07_01_0579 + 4299104-4299652,4300845-4300935,4301018-4301211,430... 59 1e-09
11_01_0296 - 2222329-2222481,2222777-2222836,2222965-2223064,222... 58 2e-09
11_01_0724 + 5981680-5981748,5982301-5982397,5982496-5982593,598... 55 3e-08
07_03_0320 - 16748643-16748729,16748790-16748826,16749207-16749559 33 0.080
04_01_0092 + 985063-985752 31 0.43
10_08_0012 - 14092640-14093258,14093495-14093517 30 0.99
06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397 29 1.3
02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345 29 1.7
07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425 28 3.0
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376... 27 5.3
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032... 27 7.0
06_03_0615 - 22761375-22761760,22762218-22765026 27 9.2
>04_04_1590 - 34640923-34641735,34642313-34642774,34643648-34643908
Length = 511
Score = 98.3 bits (234), Expect = 2e-21
Identities = 50/93 (53%), Positives = 63/93 (67%)
Frame = +3
Query: 168 MCGLDIDSKASYVRLSGIICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIR 347
+ GL+ D + V + ++CT+GPASR V MLEK++ GMNVAR NFSHG+HEYH ET+
Sbjct: 10 LAGLENDD--ARVPKTKLVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGTHEYHQETLD 67
Query: 348 NCREAEKNYSAKLGTPFSLAIALDTKGPEIRTG 446
N R+A N T A+ LDTKGPEIRTG
Sbjct: 68 NLRQAMHN------TGVLCAVMLDTKGPEIRTG 94
>01_01_1205 -
9693702-9694517,9694591-9695076,9697014-9697095,
9697876-9698051,9698326-9698580
Length = 604
Score = 74.9 bits (176), Expect = 3e-14
Identities = 37/77 (48%), Positives = 49/77 (63%)
Frame = +3
Query: 219 IICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKNYSAKLGTPF 398
I+CT+GPASR V M+ +++ GM VAR NFSHGSHEYH ET+ N R A ++ T
Sbjct: 23 IVCTLGPASRSVEMIGRLLRAGMCVARFNFSHGSHEYHQETLDNLRAAMES------TGI 76
Query: 399 SLAIALDTKGPEIRTGL 449
A+ LDTK + G+
Sbjct: 77 LCAVMLDTKARDFVLGV 93
>10_08_0999 +
22121029-22121235,22121819-22122082,22122123-22122324,
22122456-22122590,22122668-22122778,22122871-22122959,
22123237-22123299,22123461-22123636,22123785-22123887,
22124286-22124461,22124625-22124733,22124851-22124943,
22126294-22126435,22126655-22126671
Length = 628
Score = 69.3 bits (162), Expect = 1e-12
Identities = 44/114 (38%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Frame = +3
Query: 102 TGSADKPGQQLAAANVGS-QLQHMCGLDIDSKASYV-----RLSGIICTIGPASRDVTML 263
T ++D+ LA + GS Q++ D+ + V R + I+CTIGP++ M+
Sbjct: 48 TSTSDRVAADLALGSNGSLSAQNIAENTADATSQVVSANSRRKTKIVCTIGPSTNTREMI 107
Query: 264 EKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKNYSAKLGTPFSLAIALDTK 425
K+ ETGMNVARMN SHG H+ H + I + K Y+AK +AI LDTK
Sbjct: 108 WKLAETGMNVARMNMSHGDHQSHQKVI----DLVKEYNAKNTDGNVIAIMLDTK 157
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 61.3 bits (142), Expect = 3e-10
Identities = 34/79 (43%), Positives = 47/79 (59%)
Frame = +3
Query: 189 SKASYVRLSGIICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEK 368
SK + R + I+CTIGP++ M+ K+ E GMNVAR+N SHG H H + I + K
Sbjct: 108 SKPNVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVI----DLVK 163
Query: 369 NYSAKLGTPFSLAIALDTK 425
Y+A+ +AI LDTK
Sbjct: 164 EYNAQTKDNV-IAIMLDTK 181
>12_01_0297 -
2244793-2244945,2245337-2245396,2245529-2245628,
2245712-2245779,2245922-2246017,2246156-2246244,
2246320-2246464,2246643-2246732,2246816-2246887,
2247052-2247132,2247361-2247492,2247613-2247690,
2247930-2248085,2248227-2248324,2248418-2248499
Length = 499
Score = 59.7 bits (138), Expect = 1e-09
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = +3
Query: 210 LSGIICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKNYSAKLG 389
++ I+ T+GP SR V + ++ GM+VAR +FS G EYH ET+ N + A K+ + KL
Sbjct: 1 MTKIVGTLGPKSRSVDTISSCLKAGMSVARFDFSWGDAEYHQETLENLKVAIKS-TKKL- 58
Query: 390 TPFSLAIALDTKGPEIR 440
A+ LDT GPE++
Sbjct: 59 ----CAVMLDTVGPELQ 71
>07_01_0579 +
4299104-4299652,4300845-4300935,4301018-4301211,
4301501-4301622,4302378-4302856,4303033-4303334
Length = 578
Score = 59.3 bits (137), Expect = 1e-09
Identities = 30/80 (37%), Positives = 44/80 (55%)
Frame = +3
Query: 207 RLSGIICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKNYSAKL 386
R + ++CT+GPA+ LE + GMNVAR+N HG E+H IR R +
Sbjct: 99 RRTKLVCTVGPATCGADELEALAVGGMNVARVNMCHGDREWHRGVIRAVRRLNEEKG--- 155
Query: 387 GTPFSLAIALDTKGPEIRTG 446
F++A+ +DT+G EI G
Sbjct: 156 ---FAVAVMMDTEGSEIHMG 172
>11_01_0296 -
2222329-2222481,2222777-2222836,2222965-2223064,
2223152-2223219,2223369-2223464,2223603-2223691,
2223762-2223906,2224100-2224189,2224271-2224342,
2224543-2224623,2224766-2224897,2225026-2225103,
2225280-2225435,2225521-2225618,2225712-2225793
Length = 499
Score = 58.4 bits (135), Expect = 2e-09
Identities = 32/77 (41%), Positives = 48/77 (62%)
Frame = +3
Query: 210 LSGIICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKNYSAKLG 389
++ I+ T+GP SR V + ++ GM+VAR +FS G EYH ET+ N + A K+ + KL
Sbjct: 1 MTKIVGTLGPKSRAVDTISSCLKAGMSVARFDFSWGDAEYHQETLENLKLAIKS-TKKL- 58
Query: 390 TPFSLAIALDTKGPEIR 440
A+ LDT GPE++
Sbjct: 59 ----CAVMLDTVGPELQ 71
>11_01_0724 +
5981680-5981748,5982301-5982397,5982496-5982593,
5983535-5983690,5983986-5984063,5984135-5984266,
5984856-5984936,5985442-5985510,5985597-5985686,
5986001-5986145,5986218-5986276,5986384-5986479,
5986561-5986628,5986704-5986803,5986910-5986966,
5987179-5987337
Length = 517
Score = 54.8 bits (126), Expect = 3e-08
Identities = 31/77 (40%), Positives = 46/77 (59%)
Frame = +3
Query: 210 LSGIICTIGPASRDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKNYSAKLG 389
L+ I+ T+GP S V ++++ + GM VAR +FS YH ET+ N R+A +N + KL
Sbjct: 29 LTKIVGTLGPNSHSVEVIQECLTAGMAVARFDFSWMDASYHQETLNNLRKAAQNVN-KL- 86
Query: 390 TPFSLAIALDTKGPEIR 440
+ LDT GPEI+
Sbjct: 87 ----CPVMLDTLGPEIQ 99
>07_03_0320 - 16748643-16748729,16748790-16748826,16749207-16749559
Length = 158
Score = 33.5 bits (73), Expect = 0.080
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 314 MGEVHSSYVHARFHHLFQHGHITRGGSNSTDDARETDIR 198
+G+ H + + H + +G T GG+ T+DA E D R
Sbjct: 80 IGDAHGAAARSEMHRIIGNGEATDGGALDTEDADELDAR 118
>04_01_0092 + 985063-985752
Length = 229
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = -1
Query: 317 TMGEVHSSYVHARFHHLFQHGHITRGGSNSTDDARETDIRSLGI---DVKATHM 165
T + +++Y FH LFQH I GG D+ + R LG+ D++A+HM
Sbjct: 153 TTKDSNNNYYRPGFHRLFQHFCIHPGGRRVLDEVQ----RGLGLTDDDMEASHM 202
>10_08_0012 - 14092640-14093258,14093495-14093517
Length = 213
Score = 29.9 bits (64), Expect = 0.99
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 246 RDVTMLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAE 365
RD ++LE + G ++ +F+ G H +H E N +A+
Sbjct: 18 RDYSLLEAITPNGKSIKSTSFAVGGHSWHVEYYPNGYDAD 57
>06_02_0034 - 10800691-10802215,10802294-10802828,10802902-10803397
Length = 851
Score = 29.5 bits (63), Expect = 1.3
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = -2
Query: 160 NCEPTLAAASCWPGLSADPVNAISYSSLVTIKNSNLNKALSLPTLLYSLTALV 2
+C P +A SC PG +D + + SS K L KA SL LL +L A V
Sbjct: 325 SCLPIIAKLSCSPGGPSDSSSRKNTSS----KTDILEKAQSLVVLLATLVATV 373
>02_04_0222 - 21034183-21035920,21036484-21036687,21037323-21037345
Length = 654
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 446 TCPDLRALSVQSDGQGERCAKFRAI 372
TCPDL +V +DG GE A F +
Sbjct: 176 TCPDLPEPAVDADGDGEEVAVFDVV 200
>07_01_0149 - 1081805-1081821,1081860-1081941,1082412-1083425
Length = 370
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 136 PPLM-WAHNYSICVALTSIPRLLMSVSRASSVLLDPPLVM*PCW 264
PP++ + HN A++S+PR + + + ASS PP + P W
Sbjct: 57 PPMLGFLHNVDGDKAISSVPRFVPTTTAASSP-FSPPAIGSPHW 99
>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
18238033-18238041,18238096-18238248
Length = 1465
Score = 27.5 bits (58), Expect = 5.3
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 193 LESMSRPHICCNCEPTLAAASCWPGLSADPVNAISYSSLVTIKNSNLNKALSLPTLLYSL 14
LE + C + TL C P S+ P + S+L +++ ++ N SLP + +L
Sbjct: 1105 LEGLPGGFGCQDTLTTLVILGC-PSFSSLPASIRCLSNLKSLELASNNSLTSLPEGMQNL 1163
Query: 13 TAL 5
TAL
Sbjct: 1164 TAL 1166
>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
18203336-18203551,18204257-18204361,18204761-18204919
Length = 1401
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -2
Query: 193 LESMSRPHICCNCEPTLAAASCWPGLSADPVNAISYSSLVTIKNSNLNKALSLPTLLYSL 14
LE + C TL C P S+ P + S+L +++ ++ N SLP + +L
Sbjct: 1105 LEGLPGGFGCQGTLTTLVILGC-PSFSSLPASIRCLSNLKSLELTSNNSLTSLPEGMQNL 1163
Query: 13 TAL 5
TAL
Sbjct: 1164 TAL 1166
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -2
Query: 154 EPTLAAASCWPGLSADPVNAISYSSLVTIKNSNLNKALSLPTLLYSLTAL 5
+PT A W G++ P + + SL N+ LN + SLP L SL++L
Sbjct: 52 DPTAATPCSWQGVTCSPQSRVVSLSL---PNTFLNLS-SLPPQLASLSSL 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,321,640
Number of Sequences: 37544
Number of extensions: 335954
Number of successful extensions: 947
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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