Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D21
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch... 119 2e-28
SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t... 44 1e-05
SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex... 44 2e-05
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 27 1.9
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 26 2.6
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.6
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 26 3.4
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 26 3.4
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 4.5
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 25 5.9
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 7.9
>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
Tim17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 164
Score = 119 bits (287), Expect = 2e-28
Identities = 53/115 (46%), Positives = 75/115 (65%)
Frame = +1
Query: 115 EYTREPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVGFSRKMLGSLAAVKERSPIV 294
++TR+PCP+ IL+D HSIKG+RN+P G K + ++AA K R+P++
Sbjct: 5 DHTRDPCPYVILNDFGAAFSMGTIGGAIWHSIKGWRNSPPG--EKRISAIAAAKTRAPVL 62
Query: 295 AGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSAL 459
GNF VWGG+FST DC++ +R+KEDPWN+I++G TGG LA R G A A+
Sbjct: 63 GGNFGVWGGLFSTFDCAVKGVRRKEDPWNAIIAGFFTGGALAVRGGWRATRNGAI 117
>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
translocase complex subunit Tim23|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 44.0 bits (99), Expect = 1e-05
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 247 KMLGSLAAVKERSPIVAGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAAR 426
++ G L V R P V + V +++ I+ + Y RQK NS+ +GALTG + +
Sbjct: 119 RLNGILNGVTRRGPFVGNSLGVLALVYNGINSLIGYKRQKHGWENSVAAGALTGALYKST 178
Query: 427 NGVPAMA-GSALV 462
G+ AMA S+LV
Sbjct: 179 RGLRAMAISSSLV 191
>SPBC25H2.04c |tim22||TIM22 inner membrane protein import complex
subunit Tim22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +1
Query: 280 RSPIVAGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAM 444
RS A NF + G ++S +C + R K D +N+I +G TGG LA R+G A+
Sbjct: 99 RSFSTAKNFGLLGLIYSGSECCIEAFRAKTDIYNAIAAGVFTGGALAVRSGPKAI 153
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -1
Query: 350 TSEQSIVENMPPHTAKFPATIGDRSFTAAKLPNIFLLNPTGAF 222
+ E ++ + PP TAK PA++ + + + AKLP + L +G F
Sbjct: 169 SQEYTLDKLSPPSTAKPPASVIEFNPSLAKLPTVKYLQ-SGPF 210
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 229 PVGFSRKMLGSLAAV-KERSPIVAGNFAVWGGMFSTIDCSLVYLRQK 366
P G+ +G L + ++ + +V F V + S +DCS ++RQK
Sbjct: 224 PFGYRIPSVGQLQLILRQTNGLVIKVFLVPYNVSSMVDCSKTWIRQK 270
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -1
Query: 377 QGSSFCLR*TSEQSIVENMPPHTAKFPATIGDRSFTAAKLPNI 249
+ SSF T+ S V PP T FP+T T++ L +I
Sbjct: 674 ESSSFYSNVTTSSSTVSTPPP-TTSFPSTFTTSFITSSSLSSI 715
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 327 FYNRLLTSLP*TERGPLEFNYEWSSDWR 410
FYN ++ P P E NY+WS ++R
Sbjct: 220 FYNTQASTAP----NPQEINYQWSHEYR 243
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 3.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = -1
Query: 347 SEQSIVENMPPHTAKFPATIGDRSFTAAKLPNIFLLNPTGA 225
+E I + PH A + D+ T A + + PTG+
Sbjct: 208 NEMHIHRGLSPHMAVLKVFVNDKFLTEAVADGLIISTPTGS 248
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 4.5
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = -1
Query: 467 PPTRALPAIAGTPFLAARIPP---VRAPLIIEFQGSSFCLR*TSEQSIVENMPPHTAKFP 297
PP +P G+ A IP V + + SS+ + S S V + PPHT +
Sbjct: 158 PPVSTVPIQFGSITRNAAIPSKPKVSGNMQNKSGVSSYSSKSQSVNSSVTSNPPHTEEPV 217
Query: 296 ATIGDRSFTAAKLP 255
A + S TA K P
Sbjct: 218 AAKPEASSTATKGP 231
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 412 YLQSELHS*LNSKGPLS 362
YLQ+ +HS LN KG LS
Sbjct: 174 YLQTAVHSSLNGKGGLS 190
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 24.6 bits (51), Expect = 7.9
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -2
Query: 349 LVSNLL*KTCLPIQQNF 299
+VSN+L CLPI+++F
Sbjct: 1230 MVSNILSNECLPIKESF 1246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,353
Number of Sequences: 5004
Number of extensions: 33311
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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