Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D21
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866 125 2e-29
03_04_0070 + 17042509-17043129 115 2e-26
03_04_0073 + 17059358-17059921 50 7e-07
03_01_0102 - 826827-827411 40 0.001
10_08_0647 - 19576672-19577259 38 0.003
12_02_0523 + 19988949-19989234,19992420-19992484,19992570-199926... 33 0.090
07_01_0422 + 3220988-3221536 31 0.64
03_04_0072 + 17054137-17054499 31 0.64
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 1.5
10_08_0806 + 20709599-20710597 29 2.6
03_02_0220 - 6531255-6532667 29 2.6
12_01_1115 - 11904334-11904500,11905196-11905196,11905356-119055... 28 3.4
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 28 4.5
06_03_0494 - 21407798-21408142,21408238-21408333,21408854-214096... 28 4.5
06_02_0254 - 13517352-13517557,13517612-13519073 27 5.9
05_04_0313 + 20129358-20129777 27 5.9
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 27 7.8
02_02_0237 - 8150491-8151066 27 7.8
>07_03_1194 - 24708281-24708796,24708990-24708996,24709199-24709866
Length = 396
Score = 125 bits (301), Expect = 2e-29
Identities = 59/120 (49%), Positives = 78/120 (65%)
Frame = +1
Query: 115 EYTREPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVGFSRKMLGSLAAVKERSPIV 294
E +REPCP RILDD H +KG N+P G +++G AV+ +P V
Sbjct: 5 ETSREPCPDRILDDVGGAFGMGAVGGSLFHFLKGTYNSPNG--ERLVGGAQAVRMNAPRV 62
Query: 295 AGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSALVGGIL 474
G+FAVWGG+FS DC++V++RQKEDPWNSI++GA TGG L+ R G A SAL+GG+L
Sbjct: 63 GGSFAVWGGLFSAFDCTMVFMRQKEDPWNSIIAGAATGGFLSMRQGPGAAGRSALMGGML 122
Score = 120 bits (288), Expect = 8e-28
Identities = 58/117 (49%), Positives = 76/117 (64%)
Frame = +1
Query: 124 REPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVGFSRKMLGSLAAVKERSPIVAGN 303
R+PCP RILDD H +KG RN+P G + G + V+ +P VAG
Sbjct: 232 RDPCPDRILDDIGASFGMGAVGGSFFHFVKGLRNSPSG--ARFAGGMEGVRMNAPRVAGG 289
Query: 304 FAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSALVGGIL 474
FAVW G+FS DC+LV +RQKEDP+NSI++GA TGGILAAR G+ A+A ++L G +L
Sbjct: 290 FAVWCGLFSACDCALVSVRQKEDPYNSIIAGAATGGILAARQGLRAVARASLQGAVL 346
>03_04_0070 + 17042509-17043129
Length = 206
Score = 115 bits (277), Expect = 2e-26
Identities = 56/117 (47%), Positives = 70/117 (59%)
Frame = +1
Query: 124 REPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVGFSRKMLGSLAAVKERSPIVAGN 303
REPCP RILDD H ++G N+P G ++ G AV+ P GN
Sbjct: 6 REPCPDRILDDVGGAFAMGAVGGTAFHFLRGAYNSPNG--HRLSGGSQAVRMSVPRTGGN 63
Query: 304 FAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSALVGGIL 474
FA WGG+FS DC++V+ RQKEDPWNSI++GA TG +L+ R G A A SALVG L
Sbjct: 64 FAAWGGLFSAFDCAMVHARQKEDPWNSILAGAATGAVLSLRQGPRATATSALVGASL 120
>03_04_0073 + 17059358-17059921
Length = 187
Score = 50.4 bits (115), Expect = 7e-07
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +1
Query: 109 MDEYTREPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVGFSRKMLGSLAAVKERSP 288
M+E P P +LD++ H G R+ P G R + G+ AV++ +P
Sbjct: 1 MEEEWGVPYPDCVLDNAGAGFVGGAAAGTLAHLFTGLRDFPCG--RHLAGAAQAVRDGAP 58
Query: 289 IVAGNFAVWGGMFSTIDCSLVYLRQK-EDPWNSIMSGALTGGILAARNGVPAMAGSALVG 465
+A +A ++S +L + +DP S+ +GA TG + R+G A+ +ALVG
Sbjct: 59 CLATRWAARLAVYSAACHALSSATDRHDDPLVSVAAGAATGAVARLRHGPLAVGRAALVG 118
>03_01_0102 - 826827-827411
Length = 194
Score = 39.5 bits (88), Expect = 0.001
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +1
Query: 220 RNAPVGFSRKMLGS--LAAVKERSPIVAGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMS 393
RNA G + K+ + L + + V G +++ I+ +V +R ++D NS+ +
Sbjct: 90 RNAEPGDTAKIRANRVLNSCGSNGRRMGNTLGVIGLLYAGIESGMVAVRDRDDWINSVTA 149
Query: 394 GALTGGILAARNGVPAMAGSALVGGIL 474
G TG + A NG + A + +GG+L
Sbjct: 150 GLGTGALFRAANGPRSAAVAGAIGGVL 176
>10_08_0647 - 19576672-19577259
Length = 195
Score = 38.3 bits (85), Expect = 0.003
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 298 GN-FAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSALVGGIL 474
GN V G M++ ++ ++V R ++D NS+ +G TG + A NG + A + +GG+L
Sbjct: 118 GNRLGVIGLMYAGMESAMVAARDRDDWVNSVAAGLGTGALFRAANGPRSAAVAGAIGGVL 177
>12_02_0523 +
19988949-19989234,19992420-19992484,19992570-19992642,
19992765-19992818,19993532-19993761
Length = 235
Score = 33.5 bits (73), Expect = 0.090
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 304 FAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSALVGG 468
FAV G+ S + C+L LR K+D N+ ++G TG L+ M S L G
Sbjct: 119 FAVLAGVQSLVACTLRQLRGKDDVLNAGIAGCCTGLALSFPGAPQTMIQSCLTFG 173
>07_01_0422 + 3220988-3221536
Length = 182
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 205 SIKGFRNAPVGFSRKMLGSLAAVKERSPIVAGNFAVWGGMFSTIDCSLVYLRQKEDPW 378
+++ F G +RK G AA + P+ N+ + + DC ++ R+ DPW
Sbjct: 90 TLEAFPEVVYGEARKARGGAAATQTCCPVCLENYGDGDVLRALPDCGHLFHRECVDPW 147
>03_04_0072 + 17054137-17054499
Length = 120
Score = 30.7 bits (66), Expect = 0.64
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 364 KEDPWNSIMSGALTGGILAARNGVPAMAGSAL 459
KE+ WN + +GA T G L R G AL
Sbjct: 8 KEESWNFVFAGAATSGFLRLRQGAVTAGRDAL 39
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 464 PTRALPAIAGTPFLAARIPPVRAPLIIEFQGSS 366
P LP+++G P + +PP+ P+ ++ QGSS
Sbjct: 567 PLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSS 599
>10_08_0806 + 20709599-20710597
Length = 332
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -1
Query: 473 RIP-PTRALPAIAGTPFLAARIPPVRAPLIIEFQGSS 366
RIP P R A A T FLA + PP APL++ SS
Sbjct: 46 RIPIPPRVATAAAATGFLA-KPPPPLAPLVMSSSSSS 81
>03_02_0220 - 6531255-6532667
Length = 470
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -1
Query: 473 RIPPTRALPAIAGTPFLAARIP--PVRAPLIIEFQGSSFCLR*TSEQSIVENMPPHTAKF 300
R+PP+ LP+ LAA +P P PL++ LR +++ + H F
Sbjct: 80 RLPPSSPLPSSYALSSLAASLPDLPSAVPLLLSSSPQPLPLR---HYALLLGISAHAGLF 136
Query: 299 PATI 288
PA++
Sbjct: 137 PASL 140
>12_01_1115 -
11904334-11904500,11905196-11905196,11905356-11905508,
11905559-11905969
Length = 243
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 370 DPWNSIMSGALTGGILAARNGVPAMAGSA 456
DPW + G+ +GG+ R G PA A SA
Sbjct: 94 DPWPATTGGSRSGGVHCGR-GFPATAASA 121
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -1
Query: 413 IPPVRA-PLIIEFQGSSFC 360
IPPVR P+++ F G SFC
Sbjct: 463 IPPVRRLPIVVYFHGGSFC 481
>06_03_0494 -
21407798-21408142,21408238-21408333,21408854-21409670,
21410211-21410363,21410506-21410744
Length = 549
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 476 RRIPPTRALPAIAGTPFLAARIPPVRAPL 390
RR+P ALP + P LAA P V A L
Sbjct: 43 RRVPGPAALPVVGHLPLLAAHGPDVFAVL 71
>06_02_0254 - 13517352-13517557,13517612-13519073
Length = 555
Score = 27.5 bits (58), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 141 AYP**FWRRVHYGSYRWW 194
A P FWRR Y +YRW+
Sbjct: 381 AVPVLFWRRTAYDAYRWF 398
>05_04_0313 + 20129358-20129777
Length = 139
Score = 27.5 bits (58), Expect = 5.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = -3
Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTP 139
++R IS T +V + TY N+RA+RII TP
Sbjct: 96 ASRIISRTLMKVAVREIATYWFENQRASRIISRTP 130
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 280 RSPIVAGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSAL 459
R ++ N + GG+ S +D ED W +++ LTG L A++ M + L
Sbjct: 104 RIDVLINNAGLRGGVHSPLDWP-------EDEWETLIKTNLTGSWLVAKHVCRRMRDAKL 156
Query: 460 VGGIL 474
G ++
Sbjct: 157 KGSVI 161
>02_02_0237 - 8150491-8151066
Length = 191
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 237 SNRCISETFYRV--KYTTTYSSHNERAARIIKDTPRTRLSRVF 115
++R IS T +V + + TY N+RA+RII TP L V+
Sbjct: 96 ASRIISRTPMKVTVRESATYWFVNQRASRIISRTPMEVLELVY 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,408,025
Number of Sequences: 37544
Number of extensions: 215339
Number of successful extensions: 611
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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