Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D21
(476 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical ... 124 3e-29
U40800-15|AAA81499.1| 158|Caenorhabditis elegans Hypothetical p... 65 3e-11
Z49125-3|CAB97233.1| 213|Caenorhabditis elegans Hypothetical pr... 43 1e-04
Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical pr... 33 0.14
U41270-2|AAA82440.1| 298|Caenorhabditis elegans Cell-death-rela... 28 4.0
AY303578-1|AAP57300.1| 298|Caenorhabditis elegans cell death-re... 28 4.0
Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical pr... 27 7.0
U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein. 27 7.0
AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protei... 27 7.0
>AF038611-6|AAB92039.1| 181|Caenorhabditis elegans Hypothetical
protein E04A4.5 protein.
Length = 181
Score = 124 bits (300), Expect = 3e-29
Identities = 59/122 (48%), Positives = 79/122 (64%)
Frame = +1
Query: 109 MDEYTREPCPWRILDDSXXXXXXXXXXXXXXHSIKGFRNAPVGFSRKMLGSLAAVKERSP 288
M+EYTREPCP+RI DD + G++NA G +K++G + V+ RS
Sbjct: 1 MEEYTREPCPYRIGDDIGSAFAMGLVGGSIFQAFGGYKNAAKG--KKLVGMMREVRMRST 58
Query: 289 IVAGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSALVGG 468
+ FA WGGMFSTIDC LV +R+KEDP NSI+SG LTG +LA R+G MAGSA++G
Sbjct: 59 LTGVQFAAWGGMFSTIDCCLVAIRKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGS 118
Query: 469 IL 474
++
Sbjct: 119 VI 120
>U40800-15|AAA81499.1| 158|Caenorhabditis elegans Hypothetical
protein D2096.1 protein.
Length = 158
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/50 (60%), Positives = 36/50 (72%)
Frame = +1
Query: 280 RSPIVAGNFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARN 429
RS + FA WGG+FSTIDC LV R+KED NSI+SG LTG +LA R+
Sbjct: 2 RSTLAGVQFAAWGGLFSTIDCCLVANRKKEDSINSIVSGGLTGALLAIRS 51
>Z49125-3|CAB97233.1| 213|Caenorhabditis elegans Hypothetical
protein C47G2.3 protein.
Length = 213
Score = 43.2 bits (97), Expect = 1e-04
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 301 NFAVWGGMFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGV-PAMAGSA 456
NF G MFS +C+L +R K D N SG + GG+L R G+ PA+ G+A
Sbjct: 146 NFGSIGLMFSGTECALETIRAKSDWRNGTYSGGIVGGLLGLRAGIMPAVWGAA 198
>Z81063-5|CAB02956.1| 242|Caenorhabditis elegans Hypothetical
protein F15D3.7 protein.
Length = 242
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = +1
Query: 322 MFSTIDCSLVYLRQKEDPWNSIMSGALTGGILAARNGVPAMAGSALVG 465
M+S ++ L +R ED N +GALTG I + +G+ A ALVG
Sbjct: 171 MYSALEIGLRSVRA-EDELNGFGAGALTGAIYRSPHGLKASGVGALVG 217
>U41270-2|AAA82440.1| 298|Caenorhabditis elegans Cell-death-related
nuclease protein4 protein.
Length = 298
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 312 MGRHVFYNRLLTSLP*TERGPLEFNYEWSSDW 407
MG V N LLT R PL +N EW S +
Sbjct: 198 MGAKVTVNELLTCCASWRRQPLVYNKEWRSSF 229
>AY303578-1|AAP57300.1| 298|Caenorhabditis elegans cell
death-related nuclease 4 protein.
Length = 298
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +3
Query: 312 MGRHVFYNRLLTSLP*TERGPLEFNYEWSSDW 407
MG V N LLT R PL +N EW S +
Sbjct: 198 MGAKVTVNELLTCCASWRRQPLVYNKEWRSSF 229
>Z81485-1|CAB03975.1| 403|Caenorhabditis elegans Hypothetical
protein C49F5.1 protein.
Length = 403
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 214 GFRNAPVGFSRKMLGSLAAVKERSPIVAGNFAV 312
GF ++ +GF K L A++++SP +A V
Sbjct: 78 GFTDSSIGFDHKTCNVLVALEQQSPEIAAGVHV 110
>U58085-1|AAC47122.1| 780|Caenorhabditis elegans CUL-3 protein.
Length = 780
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 261 APQHFSTESNRCIS-ETFYRVKYTTTYSSHNERAARIIKDTPRTRLSRVFIHI 106
A Q ++N +S E YR YT H ER +KD + ++ V I I
Sbjct: 37 AIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQDHMASVRIRI 89
>AC024744-3|AAK72067.1| 777|Caenorhabditis elegans Cullin protein 3
protein.
Length = 777
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 261 APQHFSTESNRCIS-ETFYRVKYTTTYSSHNERAARIIKDTPRTRLSRVFIHI 106
A Q ++N +S E YR YT H ER +KD + ++ V I I
Sbjct: 37 AIQEIQRKNNSGLSFEELYRNAYTMVLHKHGERLYNGLKDVIQDHMASVRIRI 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,737,274
Number of Sequences: 27780
Number of extensions: 185728
Number of successful extensions: 422
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -