Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D21
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   1.7  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.0  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 188 VVVYFTL*KVSEMHLLDSVEKCWG 259
           +++YF   ++S  HLL+  EK  G
Sbjct: 23  LILYFIYFRISRRHLLELAEKIPG 46


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 261 LSSSKGAVTNCSRKFCCMGR 320
           +S SKG+  N S+   C+G+
Sbjct: 232 VSGSKGSNINISQVIACVGQ 251


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 166 RRQNHQGYATDKALSCIHPYFFDKPS*RDTMT 71
           ++Q++ GYA+  + S   PY  +    RD ++
Sbjct: 125 QQQHNNGYASPMSTSSYDPYSPNSKIGRDELS 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,033
Number of Sequences: 438
Number of extensions: 2281
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)