Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D20
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.077
SPBC216.06c |swi1||replication fork protection complex subunit S...    26   0.95 
SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    25   1.3  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    23   8.9  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    23   8.9  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    23   8.9  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.5 bits (63), Expect = 0.077
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
 Frame = -1

Query: 237 LPPGTARDGRNQTPDGTTRTRTNVTLLDHVHVYKKEKHNKTKLHVN--TVCF*TNHVTMA 64
           +PP T+ +     P  T+   T  T     HV           HVN  TV   T HV   
Sbjct: 84  VPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTT 143

Query: 63  TAKWPNAHAHS 31
           T   P  HA++
Sbjct: 144 TVVPPTTHANT 154


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -1

Query: 219 RDGRNQTPDGTTRT-RTNVTLLDHVHVYKKEKHNKTKLHV 103
           R+  N+  D   +  +TN T++DH    KKE H ++  ++
Sbjct: 875 REALNKITDRKRKKMKTNETIIDHTTRKKKENHLRSAKYI 914


>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 159 LDHVHVYKKEKHNKTKLHVN 100
           LDH ++ + ++HNK  +H N
Sbjct: 154 LDHSYILEDQQHNKCLVHCN 173


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 222 ARDGRNQTPDGTTRTRTNVTL 160
           +R+  N +P+G    RTN T+
Sbjct: 386 SRNSNNNSPEGYDNNRTNPTV 406


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -1

Query: 237 LPPGTARDGRNQTPDGTTRTRTNVTLLDHVHVYKKEKHNKTK 112
           +PP   + G N +   T +T  +   L++  + K++   +TK
Sbjct: 2   VPPSPPKTGSNNSAPVTGKTVQSGNALNNSGLVKRQARKRTK 43


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 28  LRMRVRVRPFCRCHSDVISLK 90
           L++  R+     CHSD ISLK
Sbjct: 289 LKVDTRLVVHAYCHSDFISLK 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,007,430
Number of Sequences: 5004
Number of extensions: 17271
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)