Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D19
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    36   0.002
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr...    29   0.14 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   0.43 
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    26   1.3  
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   2.3  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    24   4.0  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    24   4.0  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    24   4.0  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    24   4.0  
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    24   4.0  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    24   5.3  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   5.3  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    24   5.3  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    23   7.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     23   7.1  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    23   9.3  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    23   9.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    23   9.3  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 16/22 (72%), Positives = 18/22 (81%)
 Frame = +2

Query: 227 FAKDFLAGGISAAVSKTAVAPI 292
           F  DF+ GG+SAAVSKTA API
Sbjct: 27  FFFDFMMGGVSAAVSKTAAAPI 48


>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 473

 Score = 29.1 bits (62), Expect = 0.14
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 84  NLLIKNRGFVFRGFSIPVCAEVLP 155
           ++L  N G  FRG++IP C ++LP
Sbjct: 92  SVLDPNEGIRFRGYTIPECQKLLP 115


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 0.43
 Identities = 10/17 (58%), Positives = 16/17 (94%)
 Frame = +2

Query: 242 LAGGISAAVSKTAVAPI 292
           L+GG++A VS+TAV+P+
Sbjct: 25  LSGGVAATVSRTAVSPL 41


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 215 DPVAFAKDFLAGGISAAVSKTAVAPI 292
           DP      F++GGI+  VS+T  AP+
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPL 148


>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = -3

Query: 241 KVFGERDWIGEIRHFVRLCGPLW--VDTCGQGRTSAHTGMEKPRKT 110
           ++F E+ W+    +F  L  PLW  +D  G+   S H     P  T
Sbjct: 132 ELFAEKKWMIMSFYFPYLAIPLWMAIDMGGRLVKSCHAAKSGPSST 177


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 141 HTREWKNHEKRTPDF 97
           HT+E+ +  KRTPDF
Sbjct: 317 HTQEYMSPIKRTPDF 331


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1260

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 15/37 (40%), Positives = 17/37 (45%)
 Frame = -3

Query: 184  GPLWVDTCGQGRTSAHTGMEKPRKTNPRFLIRRFGVI 74
            GP W  T G      HT M   R T+P  + RR  VI
Sbjct: 1125 GPTWNGTSG-----VHTHMTNTRITDPEVVERRAPVI 1156


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 227 TRLDRRDSTFCSIMWSSLGGYLRTRK 150
           TRL   DS  CS + S  GG  R  K
Sbjct: 106 TRLKENDSRLCSPLASPTGGLKRPAK 131


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 236 LWRTRLDRRDSTFCSI 189
           LW+ R D RD   CSI
Sbjct: 492 LWKNRKDFRDKLICSI 507


>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 201 ILFDYVVLFGWILADKEGLRHTREWKNHEKRTPDF 97
           I F ++ L    +    G+  ++ WK H +RT  F
Sbjct: 200 ITFTWITLMFISMIIPIGISFSKLWKKHSRRTAQF 234


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = -2

Query: 185 WSSLGGYLRTRKDFGTHGNGKTTKNEPPIFNQEIWSYFVITGAQG*CVP 39
           WSS G  L  R     + NGK  + +     +    YF+  G    C P
Sbjct: 173 WSSRGVLLALRNSAKFYENGKLVEIDGKDLMETAKPYFIYPGYAFVCYP 221


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 599

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 5  EGENVIDRISKKAHTTPVLL 64
          EG+N ID +S K  T+P +L
Sbjct: 19 EGQNSIDGLSLKKTTSPFIL 38


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 194 SIMWSSLGGYLRTRKDFGTHGNGKTTKNEPPI 99
           S+ W +LG Y +       H     T + PP+
Sbjct: 609 SVYWPALGMYAKALDAIAFHQGALVTPSVPPV 640


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 233 KDFLAGGISAAVSKTAVAPI 292
           K  +AGG +  V+K+ VAP+
Sbjct: 19  KSGIAGGTAGCVAKSVVAPL 38


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 149 DFGTHGNGKTTKNEPPI 99
           DFG+HG+G       PI
Sbjct: 273 DFGSHGDGNLDNTRTPI 289


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 185 T*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPI 292
           T +N  SN   P   +  F+AGG++  +   A AP+
Sbjct: 35  TKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPL 69


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -1

Query: 261 AEIPPARKSLANATGSARFDILFDYVVLFGWILADKEGLRHTRE 130
           ++ P  +  +A A GSA F    D++  F   +A      HT +
Sbjct: 478 SDTPDIKSCVAAAIGSAAFAAQDDFIPYFERTMASLSQCLHTTD 521


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 171  TQRGPHNRTKCRISPIQSRSPKTFWL 248
            TQ G      CRI+ +   SP+ F+L
Sbjct: 1440 TQLGARQSNICRITILMLSSPRDFFL 1465


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,838
Number of Sequences: 5004
Number of extensions: 25791
Number of successful extensions: 97
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)