Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D19
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0117 + 13589997-13590998 37 0.002
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 37 0.003
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 36 0.006
01_06_0447 + 29452194-29452361,29453232-29453317,29453403-294536... 35 0.013
01_05_0410 + 21914995-21915168,21915268-21915353,21915446-219156... 31 0.16
07_03_0982 + 23116343-23117089,23117227-23117313,23117424-231175... 30 0.28
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 29 0.49
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 29 0.49
05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717 29 0.49
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 29 0.49
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 29 0.65
02_02_0134 + 7082462-7082627,7084199-7084325,7084404-7084611,708... 29 0.65
12_02_0303 + 17106482-17107261 28 1.1
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566... 28 1.1
02_01_0403 - 2938242-2941334 28 1.1
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 28 1.5
06_03_0691 + 23552437-23552914,23555168-23555953,23556045-235561... 28 1.5
03_02_0489 + 8836306-8836500,8836906-8837082,8837175-8837321,883... 28 1.5
06_01_0185 - 1437693-1437834,1437969-1438078,1438214-1438264,143... 27 2.0
02_05_0477 - 29339649-29340253,29340880-29341492 27 3.5
02_05_0347 - 28155272-28155437,28155518-28155792 27 3.5
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 27 3.5
07_01_1100 + 10097044-10097949,10098074-10098274,10098796-100989... 26 4.6
05_06_0290 - 26961926-26962423 26 4.6
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 26 4.6
02_05_1233 - 35112629-35112844,35112922-35112987,35113222-351132... 25 8.0
02_05_0294 + 27609656-27611305 25 8.0
>07_03_0117 + 13589997-13590998
Length = 333
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = +2
Query: 155 LSASIHPKRTT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPI 292
LS+ P S + + AFA++ +AGG++ V+KTAVAP+
Sbjct: 17 LSSDAAPSPANLSRTATAICSTPAFAREMVAGGVAGVVAKTAVAPL 62
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 36.7 bits (81), Expect = 0.003
Identities = 17/22 (77%), Positives = 18/22 (81%)
Frame = +2
Query: 227 FAKDFLAGGISAAVSKTAVAPI 292
F DFL GG+SAAVSKTA API
Sbjct: 82 FMIDFLMGGVSAAVSKTAAAPI 103
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 35.9 bits (79), Expect = 0.006
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 227 FAKDFLAGGISAAVSKTAVAPI 292
F DF+ GG+SAAVSKTA API
Sbjct: 80 FMIDFMMGGVSAAVSKTAAAPI 101
>01_06_0447 +
29452194-29452361,29453232-29453317,29453403-29453610,
29454252-29454381,29454561-29454745,29454858-29454989,
29455747-29455851
Length = 337
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = +2
Query: 227 FAKDFLAGGISAAVSKTAVAPI 292
FAK+ +AGG++ A SKTA+AP+
Sbjct: 27 FAKEMIAGGVAGAFSKTAIAPL 48
>01_05_0410 +
21914995-21915168,21915268-21915353,21915446-21915656,
21915869-21915998,21916740-21916924,21917014-21917145,
21917329-21917433
Length = 340
Score = 31.1 bits (67), Expect = 0.16
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = +2
Query: 227 FAKDFLAGGISAAVSKTAVAPI 292
+AK+ +AGG + A +KTAVAP+
Sbjct: 29 YAKELIAGGAAGAFAKTAVAPL 50
>07_03_0982 +
23116343-23117089,23117227-23117313,23117424-23117555,
23118135-23118269,23118644-23118709,23118797-23118907,
23119237-23119329,23119555-23119659,23119752-23119829
Length = 517
Score = 30.3 bits (65), Expect = 0.28
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 205 RHFVRLCGPLWVDTCGQGRTS 143
RH R CG ++ D C QGRT+
Sbjct: 389 RHHCRNCGEIFCDKCSQGRTA 409
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 205 RHFVRLCGPLWVDTCGQGRTSAHT 134
RH R CG ++ D C QGRT T
Sbjct: 359 RHHCRNCGDIFCDKCTQGRTPLTT 382
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 29.5 bits (63), Expect = 0.49
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 221 VAFAKDFLAGGISAAVSKTAVAPI 292
++ K AGG++ VS+TAVAP+
Sbjct: 41 LSICKSLFAGGVAGGVSRTAVAPL 64
>05_01_0505 + 4207841-4208455,4209982-4210143,4210247-4210717
Length = 415
Score = 29.5 bits (63), Expect = 0.49
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +2
Query: 233 KDFLAGGISAAVSKTAVAPI 292
K ++GGI+ AVS+TAVAP+
Sbjct: 136 KRLISGGIAGAVSRTAVAPL 155
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 84 NLLIKNRGFVFRGFSIPVCAEVLP 155
+LL + G FRG SIP C +VLP
Sbjct: 90 SLLDPDEGIRFRGLSIPECQKVLP 113
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 29.1 bits (62), Expect = 0.65
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 84 NLLIKNRGFVFRGFSIPVCAEVLP 155
+LL G FRG SIP C +VLP
Sbjct: 90 SLLDPEEGIRFRGLSIPECQKVLP 113
>02_02_0134 +
7082462-7082627,7084199-7084325,7084404-7084611,
7084864-7084990,7085071-7085255,7085332-7085454,
7085777-7085836,7085980-7086117
Length = 377
Score = 29.1 bits (62), Expect = 0.65
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 218 PVAFAKDFLAGGISAAVSKTAVAPI 292
P+A ++ +AGG++ V+KTAVAP+
Sbjct: 23 PLA-VRELVAGGVAGGVAKTAVAPL 46
>12_02_0303 + 17106482-17107261
Length = 259
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 291 MGATAVLETAAEIPPARKSLANATGSARFDILFDYVVLFGWILADKEGLR 142
+ A LE E+PPA + A +L D VVL G+ A LR
Sbjct: 209 LAEAAALEAIPELPPATEEEVQLVREACRRVLSDLVVLIGFFKAVANYLR 258
>02_01_0763 -
5665010-5665202,5665285-5665375,5665460-5666245,
5667745-5668225
Length = 516
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 230 AKDFLAGGISAAVSKTAVAPI 292
+K +AGG+S A S+TA AP+
Sbjct: 234 SKYLIAGGVSGATSRTATAPL 254
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 194 NKMSNLADPVAFAKDFLAGGISAAVSKTAVAPI 292
+K N +D + + +AGG++ AV++TA+ PI
Sbjct: 318 SKGENKSD-IGTSGRLMAGGLAGAVAQTAIYPI 349
>02_01_0403 - 2938242-2941334
Length = 1030
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 193 RLCGPLWVDTCGQGRTSAHTGMEKPRKTNPRFLIRRFGV 77
+LCGP+ V CG +TS + K R L FGV
Sbjct: 640 KLCGPMLVHHCGSDKTSY---VSKKRHNKTAILALAFGV 675
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 171 WIL-ADKEGLRHTREWKNHEKRTPDF*SGDLELFRDHRSTGVVC 43
W L ADK L+H R WK+ T + +LF+ ++ C
Sbjct: 53 WYLNADKPSLKHQRNWKSDPNYTKSWYDRGAKLFQANKYRKGAC 96
>06_03_0691 +
23552437-23552914,23555168-23555953,23556045-23556135,
23556214-23556406
Length = 515
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 209 LADPVAFAKDFLAGGISAAVSKTAVAPI 292
++ V +K +AGGI+ A S+TA AP+
Sbjct: 226 ISKSVNASKYLIAGGIAGAASRTATAPL 253
>03_02_0489 +
8836306-8836500,8836906-8837082,8837175-8837321,
8837636-8837737,8837824-8837894,8837992-8838059,
8838595-8838836
Length = 333
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 242 LAGGISAAVSKTAVAPI 292
LAGG++ AVSKT AP+
Sbjct: 41 LAGGVAGAVSKTCTAPL 57
>06_01_0185 -
1437693-1437834,1437969-1438078,1438214-1438264,
1438877-1439122,1439244-1439315,1439614-1439648,
1439755-1439845,1440546-1440610,1440733-1440813,
1441020-1441137,1441535-1441627,1441865-1441997,
1442471-1442503,1443264-1443343,1443444-1443549,
1443621-1443795,1443884-1443980,1444819-1445251,
1445329-1445459,1446052-1446341,1446429-1447002
Length = 1051
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 248 QPESLWRTRLDRRDSTFCSIMW 183
+P SLW+ LD STF S +W
Sbjct: 560 RPSSLWKPYLDMLPSTFGSSIW 581
>02_05_0477 - 29339649-29340253,29340880-29341492
Length = 405
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = -2
Query: 140 THGNGKTTKNEPPIFNQEIWSYFVITGAQG*CVPFLKFDRSRS 12
T N PP+ + ++F + C+ F+K +RS+S
Sbjct: 297 TWNNNGPNLRHPPVIKNDFETHFTVLTIIRQCLEFIKLNRSQS 339
>02_05_0347 - 28155272-28155437,28155518-28155792
Length = 146
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 108 FVFRGFSIPVCAEVLPCPQVSTQRGPHNRTKCRISP 215
F++RG P C+E Q+ R H R K + SP
Sbjct: 89 FMYRG-DTPFCSEECRREQIEMDRNRHRRKKQQYSP 123
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 26.6 bits (56), Expect = 3.5
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Frame = +3
Query: 60 SCDHEI-TPNLLIKNRGFV------FRGFSIPVCAE-VLPCPQVSTQRGP 185
S HEI P + N GF G S P + +LPCP VS RGP
Sbjct: 837 SSHHEIRNPRVSGYNAGFTVPTERPIYGPSAPRAPQGILPCPPVSAHRGP 886
>07_01_1100 +
10097044-10097949,10098074-10098274,10098796-10098991,
10099697-10099881
Length = 495
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 205 RHFVRLCGPLWVDTCGQGR 149
RH R CG ++ TC +GR
Sbjct: 205 RHHCRFCGGIFCRTCSKGR 223
>05_06_0290 - 26961926-26962423
Length = 165
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 162 ADKEGLRHTREWKNHEK 112
A+ E L H R W+NHE+
Sbjct: 26 AEMENLVHGRRWRNHEQ 42
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 159 PQVSTQRGPHNRTKCRISPIQSRSP 233
PQ+ P + +CR+S + SR P
Sbjct: 63 PQIKRPSSPSGQGRCRLSTVMSRVP 87
>02_05_1233 -
35112629-35112844,35112922-35112987,35113222-35113282,
35115319-35115401,35115483-35115563,35115661-35115693,
35115841-35115942,35116023-35116118,35116205-35116366,
35116469-35116660,35116742-35116852,35116940-35117011,
35117111-35117324,35117422-35117699
Length = 588
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 258 EIPPARKSLANATGSARFDILFDYVVLFGWI 166
EIP A S++ TG A F L+D + +G I
Sbjct: 126 EIPQAVGSMSAVTGQAFFIPLYDLFLTYGGI 156
>02_05_0294 + 27609656-27611305
Length = 549
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 238 VFGERDWIGEIRHFVRLCGPLWVDTCGQGRTSAHTGMEKP 119
V GE DW E + +L G + CG G+ +E+P
Sbjct: 507 VIGETDWTAEAKRAQQLTGAADIKDCG-GKGDHVAVIEQP 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,225
Number of Sequences: 37544
Number of extensions: 182139
Number of successful extensions: 483
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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