Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D19
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    58   3e-11
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    58   3e-11
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   5.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   9.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 57.6 bits (133), Expect = 3e-11
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +2

Query: 200 MSNLADPVAFAKDFLAGGISAAVSKTAVAPI 292
           MS LADPVAFAKDFLAGG++AA+SKT VAPI
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPI 31


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 57.6 bits (133), Expect = 3e-11
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +2

Query: 200 MSNLADPVAFAKDFLAGGISAAVSKTAVAPI 292
           MS LADPVAFAKDFLAGG++AA+SKT VAPI
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPI 31


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 167  YLRTRKDFGTHGNGKTTKNEPPIFNQE 87
            ++R   DF  HG   T+ +  P+  Q+
Sbjct: 1810 HIRAVSDFIYHGTSSTSSDISPMSEQK 1836


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 167  YLRTRKDFGTHGNGKTTKNEPPIFNQE 87
            ++R   DF  HG   T+ +  P+  Q+
Sbjct: 1806 HIRAVSDFIYHGTSSTSSDISPMSEQK 1832


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 124 KPRKTNPRFLIRRFGVIS*SQEH 56
           +P    PR  IR   VI  +QEH
Sbjct: 518 EPSACRPRHEIRSTDVIPGTQEH 540


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 169 DTCGQGRTSA 140
           DTC QGR +A
Sbjct: 347 DTCCQGRATA 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,692
Number of Sequences: 438
Number of extensions: 1918
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)