Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D18
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 33 0.016
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 29 0.20
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 0.46
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 28 0.60
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 0.60
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 27 1.4
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 1.4
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 1.8
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 2.4
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 26 2.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 3.2
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 4.3
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 5.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 5.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 5.6
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 5.6
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 5.6
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 24 9.8
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 24 9.8
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 24 9.8
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c... 24 9.8
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 33.1 bits (72), Expect = 0.016
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +3
Query: 156 EYSTPANDPKNMQEVTQYV---QSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITD 326
EY+ PK ++E+T+ + +S L+ +KF+ S+ + +R+D + + +L+ I +
Sbjct: 335 EYTVDLETPKLVEELTKQLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDE 394
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 29.5 bits (63), Expect = 0.20
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +3
Query: 129 DTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQ-DKFQSMSDQIINRIDEMGTRVDE 305
+ A+ TE+ +T A + MQE + ++S +++ +K + + D+I + +D G +
Sbjct: 90 EQAAMTTESLKNTMAT-VQTMQETARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV 148
Query: 306 LEKNITDL 329
L +N+TD+
Sbjct: 149 LGQNMTDI 156
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.3 bits (60), Expect = 0.46
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 141 IPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELE-KN 317
IP ++E T + ++QE + +L+ + + ++ Q + E+ + +DEL+ K+
Sbjct: 723 IPLKDELVTITGETTDLQESMHHKSRMLELVVLELHTLEQQANDLKSELSSEMDELDPKD 782
Query: 318 ITDLMTQAG-VEN 353
+ L + +G +EN
Sbjct: 783 VEALKSLSGQIEN 795
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 27.9 bits (59), Expect = 0.60
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 192 QEVTQYVQSLLQSMQDKFQSMSDQIINRIDE 284
QE+ Y+ SL + D+ + D++IN IDE
Sbjct: 37 QELENYIFSLPREKLDQIRGKPDEVINVIDE 67
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 0.60
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +3
Query: 183 KNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENEK 359
K +Q ++ LL++ Q F+ + + ++++ LEK ++ L +Q + NE+
Sbjct: 313 KELQNSNGELEKLLEAAQSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQLKLANER 371
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 26.6 bits (56), Expect = 1.4
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 96 SYYLIMAEQPTDTVAIPTENEYSTPAN--DPKNMQEVTQYVQSLLQSMQDKFQSMSDQII 269
S Y ++ + P++N Y N D K ++ +L+++ ++ + +S++
Sbjct: 85 SAYSLVKKYIAPMFRAPSQNAYEADKNALDAKFLE-----AHKILENLDEQTRKLSERTE 139
Query: 270 NRIDEMGTRVDELEKNITDL 329
+ DE+ +D+LE+ + L
Sbjct: 140 KQQDELDIALDDLEETLNTL 159
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 1.4
Identities = 21/93 (22%), Positives = 40/93 (43%)
Frame = +3
Query: 75 CNRIRVISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSM 254
C +R + +++AE+P +E+ S DP E+ + V S +M D + +
Sbjct: 216 CISLRNLEMPMLVAEEPIYEPPEDSEDGISEMNEDPSESGEMIEQVIS--STMNDVLRIL 273
Query: 255 SDQIINRIDEMGTRVDELEKNITDLMTQAGVEN 353
+ +E + L+ +TD +T EN
Sbjct: 274 DRLPRVQANESVYAYNRLKSELTDFLTPFAREN 306
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 101 ITNYTYPVTVTKQRYSIILIFEQSYTQAI 15
I +++ +T +Q Y+I L+ + S TQAI
Sbjct: 259 IIRHSFLLTAVRQTYNIFLLCKDSTTQAI 287
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.8 bits (54), Expect = 2.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 204 QYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEK 314
+Y L + DK Q+ + NR+DE+ VD K
Sbjct: 483 EYESKNLLELLDKHQTALSSVENRLDEISEIVDSYHK 519
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.8 bits (54), Expect = 2.4
Identities = 9/40 (22%), Positives = 24/40 (60%)
Frame = +3
Query: 276 IDEMGTRVDELEKNITDLMTQAGVENEK*GFKILYQSILD 395
+D+M ++ EL N ++ G+EN+ +++++ ++D
Sbjct: 443 MDQMYIKIKELGMNKNTILIGHGLENDLNAMRLIHKRVID 482
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 3.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 192 QEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENEK 359
+E+ +S L S QS ++ +++ +V +LEK + L Q NEK
Sbjct: 191 EEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKKLAGLAQQNTELNEK 246
Score = 25.4 bits (53), Expect = 3.2
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +3
Query: 195 EVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENE 356
E+ + V++L ++ + Q++ QI N + E + E KN+ + + ++NE
Sbjct: 551 ELREKVRALECDVEIQKQTVQYQISNAVKENSNTLSEQIKNLESELNSSKIKNE 604
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 63 LFCYCNRIRVISYYLIMAEQ 122
LFCYC R + L++A+Q
Sbjct: 95 LFCYCGRKFTLKTVLLLADQ 114
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 93 ISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQY 209
+S Y + + QPT T +IP + P N T Y
Sbjct: 1 MSSYALPSMQPTPTSSIPLRQMSQPTTSAPSNSASSTPY 39
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 24.6 bits (51), Expect = 5.6
Identities = 15/102 (14%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Frame = +3
Query: 75 CNRIRVISYYLIMAEQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSM 254
C + +++YY +++E + EN +S+P P+ + +++ + + + +S
Sbjct: 538 CLKQSLVAYYSVLSEVGITNEIMLRENRFSSP-KTPEGLVSISKLLLDDREHLSHDERSY 596
Query: 255 SDQIINRIDEMGTRVDELEKNITDL--MTQAGVENEK*GFKI 374
Q+ ++I + + I + + + + +++ G K+
Sbjct: 597 IQQLQSQIKSQSVHHENAAEEIRKMRNLRNSRINSQQVGEKV 638
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 24.6 bits (51), Expect = 5.6
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 117 EQPTDTVAIPTENEYSTPANDPKNMQEVTQYVQ-----SLLQSMQDKFQSMSDQIINRID 281
E P D ++ E+ STPA + + ++ V+ + L + D +S S I+ R D
Sbjct: 1424 ESPDDVQSLQAESSVSTPAVTAASEKSISLSVRFDIRNTSLVFVADASKSTSQAIVLRTD 1483
Query: 282 EMGTRVDELEKNIT 323
++ + V +L ++T
Sbjct: 1484 QI-SLVKQLSYSLT 1496
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 24.6 bits (51), Expect = 5.6
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 26/116 (22%)
Frame = +3
Query: 57 ISLFCYCNR----IRVISYYLIMAEQPTDTVAIPTE----------NEYST--------P 170
++ F YC+R +R S+ +I + +T+ PTE N ST P
Sbjct: 721 VNAFAYCDRDKKNVRNCSFTVIFRDGSEETLCAPTEESMIEWVAKINYISTLRTAGLRMP 780
Query: 171 AND---PK-NMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITD 326
+D PK + +Y++ L +++ Q D I R + TR+D+LE +IT+
Sbjct: 781 VSDSYHPKRDFSCYPKYMEEELAAIEA--QMKQDMEIARARTIKTRIDQLETSITE 834
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -2
Query: 173 RWCRVFIFSWDCYCIRRLFSHY*VITN---YTYPVTVTKQRYSIILI 42
RW ++ S C I +++ + ++ N YTYPVT Y+++++
Sbjct: 505 RWSLGWL-SKPCLVITLVYNLFALVVNVSPYTYPVTGPSFNYAVVIM 550
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/54 (20%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 153 NEYSTPANDPKN---MQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDE 305
N ++ PK ++++ YV++ + +++ + +S ++IN ++G+R+ E
Sbjct: 839 NTFAPICTSPKENDVVEKMAMYVRTAIGTLKIQDLKLSRKLINSCIDIGSRLQE 892
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +3
Query: 123 PTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQS 251
P T A NEY++ + ++ +QSLL KF S
Sbjct: 399 PNSTEAFSEINEYASALSKNYGLESQLVELQSLLTQFYQKFLS 441
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/87 (13%), Positives = 39/87 (44%)
Frame = +3
Query: 123 PTDTVAIPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVD 302
PT ++ + ++ ++ E + +++ +D+F+ + ++N++ ++
Sbjct: 454 PTSSIMGGNPSLFNGSVLSRNSVNETGSAIVDVIKQQRDRFRRANVTLVNQVSAANDKIA 513
Query: 303 ELEKNITDLMTQAGVENEK*GFKILYQ 383
LE + ++ + E+ F+ YQ
Sbjct: 514 LLESKLEEVEKSNTLLYEQMRFRDHYQ 540
>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1316
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 380 IQY-FKSLLFIFHTGLCHEISNIFL*FINPSTHL 282
IQ+ FKSLLF+F +C I + ++N L
Sbjct: 60 IQFNFKSLLFLFFVSICVVILVVRYRYLNKYARL 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,918
Number of Sequences: 5004
Number of extensions: 27148
Number of successful extensions: 100
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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